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stain / gist:10012153
Last active August 29, 2015 13:58
: stain@harold ~;curl -LiH "Accept: text/turtle" http://orcid.org/0000-0001-9842-9718/notfound
HTTP/1.1 404 Not Found
Server: nginx/1.1.19
Content-Type: text/turtle; qs=3;charset=UTF-8
Date: Sun, 06 Apr 2014 22:29:22 GMT
Access-Control-Allow-Origin: *
Connection: keep-alive
Set-Cookie: X-Mapping-fjhppofk=B2DFB1F63A3D97059291392F5F649BA0; path=/
Content-Length: 549
@stain
stain / manifest.json
Last active August 29, 2015 14:00
RO Bundle manifest created from Combine Archive manifest using https://github.com/stain/ro-combine-archive - original from https://github.com/fbergmann/CombineArchive/blob/master/Samples/DirectoryMadness.omex
{
"@context" : [ "https://w3id.org/bundle/context" ],
"id" : "/",
"manifest" : [ "/.ro/manifest.json", "/manifest.xml" ],
"createdOn" : "2013-05-30T20:18:08Z",
"aggregates" : [ {
"file" : "/manifest0.xml",
"folder" : "/",
"mediatype" : "http://identifiers.org/combine.specifications/omex-metadata",
"createdOn" : "2013-05-30T20:18:08Z",
@stain
stain / creator-might-be-a-bag.sparql
Created April 25, 2014 18:33
PREFIX rdfs: <http://www.w3.org/2000/01/rdf-schema#>
PREFIX foaf: <http://xmlns.com/foaf/0.1/>
PREFIX dct: <http://purl.org/dc/terms/>
PREFIX vcard: <http://www.w3.org/2006/vcard/ns#>
SELECT ?agent
WHERE
{ { ?r dct:creator _:b0 .
_:b0 rdfs:member ?agent
}
@stain
stain / gist:a98cba3cbe32a35a5f1e
Last active August 29, 2015 14:01
Python 2.7.5+ (default, Sep 19 2013, 13:48:49)
[GCC 4.8.1] on linux2
Type "help", "copyright", "credits" or "license" for more information.
>>> import mock
>>> import select
>>> select.select([1], [1,2], [1])
([], [1, 2], [])
>>> sel = select.select
>>> select.select = mock.Mock()
>>> select.select([1], [1,2], [1])
@stain
stain / workflowrun.prov.ttl
Created June 11, 2014 10:29
Taverna Provenance of running http://www.myexperiment.org/workflows/3067
@prefix dc: <http://purl.org/dc/elements/1.1/> .
@prefix prov: <http://www.w3.org/ns/prov#> .
@prefix cnt: <http://www.w3.org/2011/content#> .
@prefix foaf: <http://xmlns.com/foaf/0.1/> .
@prefix dcmitype: <http://purl.org/dc/dcmitype/> .
@prefix wfprov: <http://purl.org/wf4ever/wfprov#> .
@prefix dcam: <http://purl.org/dc/dcam/> .
@prefix xml: <http://www.w3.org/XML/1998/namespace> .
@prefix vs: <http://www.w3.org/2003/06/sw-vocab-status/ns#> .
@prefix dcterms: <http://purl.org/dc/terms/> .
@stain
stain / gist:c6404b959b1b38232b43
Last active August 29, 2015 14:02
Running rake test
/home/stain/src/seek/app/controllers/models_controller.rb:93: [BUG] Segmentation fault at 0x00000000000000
ruby 2.1.2p95 (2014-05-08 revision 45877) [x86_64-linux]
-- Control frame information -----------------------------------------------
c:0057 p:---- s:0268 e:000267 CFUNC :to_s
c:0056 p:0056 s:0265 e:000263 METHOD /home/stain/src/seek/app/controllers/models_controller.rb:93
c:0055 p:0012 s:0260 e:000259 METHOD /home/stain/.rvm/gems/ruby-2.1.2@seek-0-21-biovel/gems/actionpack-3.2.17/lib/action_controller/metal/implicit_render.rb:4
c:0054 p:0011 s:0254 e:000253 METHOD /home/stain/.rvm/gems/ruby-2.1.2@seek-0-21-biovel/gems/actionpack-3.2.17/lib/abstract_controller/base.rb:167
c:0053 p:0023 s:0249 e:000248 METHOD /home/stain/.rvm/gems/ruby-2.1.2@seek-0-21-biovel/gems/actionpack-3.2.17/lib/action_controller/metal/rendering.rb:10
c:0052 p:0010 s:0245 e:000244 BLOCK /home/stain/.rvm/gems/ruby-2.1.2@seek-0-21-biovel/gems/actionpack-3.2.17/lib/abstract_controller/callbacks.rb:18
@stain
stain / gist:aaf5bc710defc36f5d16
Last active August 29, 2015 14:02
Loading new artifacts from inside a Taverna Beanshell
import net.sf.taverna.raven.repository.Artifact;
import net.sf.taverna.raven.repository.BasicArtifact;
import net.sf.taverna.raven.repository.impl.LocalArtifactClassLoader;
LocalArtifactClassLoader cl = (LocalArtifactClassLoader) getClass().getClassLoader();
Artifact a = new BasicArtifact("com.example", "fred", "0.1.0");
cl.getRepository().addArtifact(a);
cl.getRepository().update(); // force any download and resolution
@stain
stain / gist:b3c8ca07cf92ab3cac2c
Created June 25, 2014 14:38
NoMethodError in Workflows#new
Showing /home/stain/src/seek/app/views/workflows/_form.html.erb where line #33 raised:
undefined method `find_by_name' for #<Class:0x00000008f6dcb0>
Extracted source (around line #33):
30: "It may not be appropriate for all workflows to be ran in this manner, for example certain workflows with interactions.") -%>
@stain
stain / gist:8fb6ed182eed9ff339ce
Last active August 29, 2015 14:04
<dd prefix="pav: http://purl.org/pav/">
<a rel="pav:authoredBy" href="http://orcid.org/0000-0001-9842-9718" >
<span property="foaf:name">Stian Soiland-Reyes</span></a>,
<a href="http://www.cs.manchester.ac.uk/">University of Manchester</a></dd>
@stain
stain / gist:3edb9c3beee930da7bff
Last active August 29, 2015 14:05
@prefix : <http://localhost/issue-management/> .
@prefix owl: <http://www.w3.org/2002/07/owl#> .
@prefix rdf: <http://www.w3.org/1999/02/22-rdf-syntax-ns#> .
@prefix xml: <http://www.w3.org/XML/1998/namespace> .
@prefix xsd: <http://www.w3.org/2001/XMLSchema#> .
@prefix foaf: <http://xmlns.com/foaf/0.1/> .
@prefix rdfs: <http://www.w3.org/2000/01/rdf-schema#> .
@base <http://www.w3.org/2002/07/owl#> .