tarokiritani

run("Bandpass Filter...", "filter_large=100 filter_small=5.1 suppress=None tolerance=5 autoscale process");

for(i=1;i<nSlices + 1;i++){
	setSlice(i);
	getStatistics(area, mean, min, max, std, histogram);
    setThreshold(mean + 2 * std, 255);
    run("Make Binary", "slice");
}

tarokiritani

roiManager("Show All");
run("Remove Overlay");
for (i=0; i<roiManager("count"); i++){
	roiManager("select",i);
	roiManager("Measure");
	x=getResult("X");
	y=getResult("Y");
	z=getResult("Slice");
	for (j=-14; j<14; j++){
		setSlice(z+j);

tarokiritani

<script src="https://ajax.googleapis.com/ajax/libs/jquery/3.1.1/jquery.min.js">
</script>
<script>
$(document).ready(function(){
  var all_cells = $("div.cell");
  $.each(all_cells, function( index, value ) {
    if ($(value).find("h1").length == 0){
      $(value).hide()
    } else{
      var bare_h1 = $(value).find("h1").text()

tarokiritani

# Copyright: Luis Pedro Coelho <luis@luispedro.org>, 2012
# License: MIT
import numpy as np

def read_roi(fileobj):
    '''
    points = read_roi(fileobj)

    Read ImageJ's ROI format
    '''