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@tarokiritani

tarokiritani/Count_helper.ijm

Created March 10, 2017 15:09
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a helper imagej macro for counting objects in 3D
Raw
Count_helper.ijm
roiManager("Show All");
run("Remove Overlay");
for (i=0; i<roiManager("count"); i++){
roiManager("select",i);
roiManager("Measure");
x=getResult("X");
y=getResult("Y");
z=getResult("Slice");
for (j=-14; j<14; j++){
setSlice(z+j);
makeRectangle(x-10,y-10,20,20);
run("Add Selection...");
}
}
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