Build Data Microscopes projects on OS X with Conda

build-all.sh

#! /bin/bash

# Run `. build-all.sh conda-env-name`

conda create -n $1 cmake eigen3 anaconda cython
bash build-dist.sh $1
bash build-common.sh $1
bash build-mm.sh $1
bash build-irm.sh $1
bash build-lda.sh $1

build-common.sh

set -x

[ -d common ] && rm -rf common
git clone git@github.com:datamicroscopes/common.git

pushd common
source activate $1
conda install cython
export DYLD_FALLBACK_LIBRARY_PATH=${HOME}/anaconda/envs/$1/lib
pip install gitpython==0.3.6
make debug
pushd debug
make
make test
make install
popd
LDFLAGS="-L/usr/local/lib"  CFLAGS="-I/usr/local/include" pip install .
pushd test
nosetests -v
popd
popd
source deactivate

build-dist.sh

set -e
rm -rf distributions
git clone git@github.com:datamicroscopes/distributions.git
pushd distributions
git reset --hard HEAD
make clean
conda remove -n $1 --all
conda create -n $1 cmake eigen3 anaconda
pip install pyflakes
source activate $1
make protobuf
VERBOSE=1 DISTRIBUTIONS_USE_PROTOBUF=1 CMAKE_INSTALL_PREFIX=${HOME}/anaconda/envs/$1 CXXFLAGS="-I/usr/local/include -L/usr/local/lib" LDFLAGS="-L/usr/local/lib"  CFLAGS="-I${HOME}/anaconda/envs/$1/include/ -I/usr/local/include" make install
source deactivate
popd

build-irm.sh

set -e
[ -d irm ] && rm -rf irm
git clone git@github.com:datamicroscopes/irm.git

pushd irm
source activate $1
conda install cython
export DYLD_FALLBACK_LIBRARY_PATH=${HOME}/anaconda/envs/$1/lib
pip install gitpython==0.3.6
make debug
pushd debug
make
make test
make install
popd
LDFLAGS="-L/usr/local/lib"  CFLAGS="-I/usr/local/include" pip install .
pushd test
nosetests -v -a '!slow'
popd
popd
source deactivate

build-kernels.sh

set -e
[ -d kernels ] && rm -rf kernels
git clone git@github.com:datamicroscopes/kernels.git

pushd kernels
source activate $1
conda install cython
export DYLD_FALLBACK_LIBRARY_PATH=${HOME}/anaconda/envs/$1/lib
pip install gitpython==0.3.6
make debug
pushd debug
make
make install
popd
LDFLAGS="-L/usr/local/lib"  CFLAGS="-I/usr/local/include" pip install .
pushd test
nosetests -v
popd
popd
source deactivate

build-lda.sh

set -e
[ -d lda ] && rm -rf lda
git clone git@github.com:datamicroscopes/lda.git

pushd lda
source activate $1
conda install cython
export DYLD_FALLBACK_LIBRARY_PATH=${HOME}/anaconda/envs/$1/lib
pip install gitpython==0.3.6
make debug
pushd debug
make
make test
make install
popd
LDFLAGS="-L/usr/local/lib"  CFLAGS="-I/usr/local/include" pip install .
pushd test
nosetests -v -a '!slow'
popd
popd
source deactivate

build-mm.sh

set -x
[ -d mixturemodel ] && rm -rf mixturemodel
git clone git@github.com:datamicroscopes/mixturemodel.git

pushd mixturemodel
source activate $1
conda install cython
export DYLD_FALLBACK_LIBRARY_PATH=${HOME}/anaconda/envs/$1/lib
pip install gitpython==0.3.6
make debug
pushd debug
make
make test
make install
popd
LDFLAGS="-L/usr/local/lib"  CFLAGS="-I/usr/local/include" pip install .
pushd test
nosetests -v -a '!slow'
popd
popd
source deactivate