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Result after cuprismatic crashing when only running on GPU
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| [I 13:34:12.255 NotebookApp] Adapting to protocol v5.1 for kernel 879c9343-88fe-43f2-a9d7-9416223907b7 | |
| COMPILED FOR GPU | |
| Simulation parameters: | |
| ===================== | |
| Algorithm: PRISM | |
| interpolationFactorX = 4 | |
| interpolationFactorY = 4 | |
| filenameAtoms = SI100.XYZ | |
| filenameOutput = tmp.mrc | |
| realspacePixelSize[0] = 0.1 | |
| realspacePixelSize[1] = 0.1 | |
| potBound = 1 | |
| numFP = 5 | |
| sliceThickness = 2 | |
| E0 = 300000 | |
| alphaBeamMax = 0.024 | |
| numThreads = 0 | |
| batchSizeTargetCPU = 1 | |
| batchSizeTargetGPU = 2 | |
| probeStepX = 0.25 | |
| probeStepY = 0.25 | |
| cellDim[0] = 20 | |
| cellDim[1] = 20 | |
| cellDim[2] = 20 | |
| tileX = 3 | |
| tileY = 3 | |
| tileZ = 1 | |
| probeDefocus = 0 | |
| C3 = 0 | |
| C5 = 0 | |
| probeSemiangle = 0.021 | |
| detectorAngleStep = 0.001 | |
| probeXtilt = 0 | |
| probeYtilt = 0 | |
| scanWindowXMin = 0.4 | |
| scanWindowXMax = 0.6 | |
| scanWindowYMin = 0.4 | |
| scanWindowYMax = 0.6 | |
| integrationAngleMin = 0 | |
| integrationAngleMax = 0.001 | |
| randomSeed = 0 | |
| includeOccupancy = true | |
| includeThermalEffects = true | |
| alsoDoCPUWork = true | |
| save2DOutput = false | |
| save3DOutput = true | |
| save4DOutput = false | |
| numGPUs = 4 | |
| numStreamsPerGPU = 3 | |
| alsoDoCPUWork = 1 | |
| earlyCPUStopCount = 100 | |
| Data Transfer Mode : Auto | |
| Formatting | |
| Execution plan: PRISM | |
| Estimated potential array size = 29573120 | |
| Estimated buffer memory needed = 53231616 | |
| meta.numStreamsPerGPU*2*batch_size*imageSize[0]*imageSize[1]= 4435968 | |
| Available GPU memory = 3579219148 | |
| Estimated GPU memory usage for single transfer method = 802170880 | |
| Using GPU codes | |
| Using single transfer method | |
| extracted 8 atoms from 10 lines in SI100.XYZ | |
| tiledCellDim[0]= 5.43 | |
| f_x = 16 | |
| f_y = 16 | |
| tiledCellDim[1] = 16.29 | |
| tiledCellDim[2] = 16.29 | |
| (f_y * round((tiledCellDim[1]) / meta.realspacePixelSize[0] / f_y) = 160 | |
| _imageSize[0] = 160 | |
| _imageSize[1] = 160 | |
| prism_pars.pixelSize[1] = 0.101812 | |
| prism_pars.pixelSize[0] = 0.101812 | |
| Warning: User requested 4 GPUs but only 1 were found. Proceeding with 1. | |
| deviceProperties.major = 5 | |
| deviceProperties.maxThreadsPerBlock = 1024 | |
| targetNumBlocks = 64 | |
| Simulation parameters: | |
| ===================== | |
| Algorithm: PRISM | |
| interpolationFactorX = 4 | |
| interpolationFactorY = 4 | |
| filenameAtoms = SI100.XYZ | |
| filenameOutput = tmp.mrc | |
| realspacePixelSize[0] = 0.1 | |
| realspacePixelSize[1] = 0.1 | |
| potBound = 1 | |
| numFP = 5 | |
| sliceThickness = 2 | |
| E0 = 300000 | |
| alphaBeamMax = 0.024 | |
| numThreads = 0 | |
| batchSizeTargetCPU = 1 | |
| batchSizeTargetGPU = 2 | |
| probeStepX = 0.25 | |
| probeStepY = 0.25 | |
| cellDim[0] = 5.43 | |
| cellDim[1] = 5.43 | |
| cellDim[2] = 5.43 | |
| tileX = 3 | |
| tileY = 3 | |
| tileZ = 1 | |
| probeDefocus = 0 | |
| C3 = 0 | |
| C5 = 0 | |
| probeSemiangle = 0.021 | |
| detectorAngleStep = 0.001 | |
| probeXtilt = 0 | |
| probeYtilt = 0 | |
| scanWindowXMin = 0.4 | |
| scanWindowXMax = 0.6 | |
| scanWindowYMin = 0.4 | |
| scanWindowYMax = 0.6 | |
| integrationAngleMin = 0 | |
| integrationAngleMax = 0.001 | |
| randomSeed = 0 | |
| includeOccupancy = true | |
| includeThermalEffects = true | |
| alsoDoCPUWork = true | |
| save2DOutput = false | |
| save3DOutput = true | |
| save4DOutput = false | |
| numGPUs = 1 | |
| numStreamsPerGPU = 3 | |
| alsoDoCPUWork = 1 | |
| earlyCPUStopCount = 100 | |
| Data Transfer : Single Transfer | |
| Entering PRISM01_calcPotential | |
| Waiting for threads... | |
| Entering PRISM02_calcSMatrix | |
| Computing compact S matrix | |
| Launching GPU worker on stream #0 of GPU #0 | |
| Computing Plane Wave #0Launching GPU worker on stream #1/ of GPU #069 | |
| Launching GPU worker on stream #2Computing Plane Wave #6 of GPU #Computing Plane Wave #120// | |
| 6969 | |
| Computing Plane Wave #18Computing Plane Wave #24Computing Plane Wave #30//6969 | |
| / | |
| 69 | |
| Computing Plane Wave #36Computing Plane Wave #42/Computing Plane Wave #48//696969 | |
| Computing Plane Wave #54/Computing Plane Wave #60/Computing Plane Wave #6669 | |
| 69 | |
| /69 | |
| GPU worker on stream #0GPU worker on stream #2GPU worker on stream #1 of GPU #0 of GPU #0 of GPU #0finished | |
| finished | |
| finished | |
| [I 13:34:26.053 NotebookApp] KernelRestarter: restarting kernel (1/5) | |
| kernel 879c9343-88fe-43f2-a9d7-9416223907b7 restarted |
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