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KDEpy error
(gpus) [thomasaar@ml2 KDEpy]$ pip install -e .
Obtaining file:///itf-fi-ml/home/thomasaar/github/KDEpy
Requirement already satisfied: numpy>=1.14.2 in /itf-fi-ml/home/thomasaar/.conda/envs/gpus/lib/python3.9/site-packages (from KDEpy==1.1.0) (1.21.0)
Requirement already satisfied: scipy>=1.0.1 in /itf-fi-ml/home/thomasaar/.conda/envs/gpus/lib/python3.9/site-packages (from KDEpy==1.1.0) (1.6.3)
Requirement already satisfied: matplotlib>=2.2.0 in /itf-fi-ml/home/thomasaar/.conda/envs/gpus/lib/python3.9/site-packages (from KDEpy==1.1.0) (3.4.2)
Requirement already satisfied: pillow>=6.2.0 in /itf-fi-ml/home/thomasaar/.conda/envs/gpus/lib/python3.9/site-packages (from matplotlib>=2.2.0->KDEpy==1.1.0) (8.2.0)
Requirement already satisfied: cycler>=0.10 in /itf-fi-ml/home/thomasaar/.conda/envs/gpus/lib/python3.9/site-packages (from matplotlib>=2.2.0->KDEpy==1.1.0) (0.10.0)
Requirement already satisfied: python-dateutil>=2.7 in /itf-fi-ml/home/thomasaar/.conda/envs/gpus/lib/python3.9/site-packages (from matplotlib>=2.2.0->KDEpy==1.1.0) (2.8.1)
Requirement already satisfied: pyparsing>=2.2.1 in /itf-fi-ml/home/thomasaar/.conda/envs/gpus/lib/python3.9/site-packages (from matplotlib>=2.2.0->KDEpy==1.1.0) (2.4.7)
Requirement already satisfied: kiwisolver>=1.0.1 in /itf-fi-ml/home/thomasaar/.conda/envs/gpus/lib/python3.9/site-packages (from matplotlib>=2.2.0->KDEpy==1.1.0) (1.3.1)
Requirement already satisfied: six in /itf-fi-ml/home/thomasaar/.conda/envs/gpus/lib/python3.9/site-packages (from cycler>=0.10->matplotlib>=2.2.0->KDEpy==1.1.0) (1.16.0)
Installing collected packages: KDEpy
Running setup.py develop for KDEpy
ERROR: Command errored out with exit status 1:
command: /itf-fi-ml/home/thomasaar/.conda/envs/gpus/bin/python3.9 -c 'import io, os, sys, setuptools, tokenize; sys.argv[0] = '"'"'/itf-fi-ml/home/thomasaar/github/KDEpy/setup.py'"'"'; __file__='"'"'/itf-fi-ml/home/thomasaar/github/KDEpy/setup.py'"'"';f = getattr(tokenize, '"'"'open'"'"', open)(__file__) if os.path.exists(__file__) else io.StringIO('"'"'from setuptools import setup; setup()'"'"');code = f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' develop --no-deps
cwd: /itf-fi-ml/home/thomasaar/github/KDEpy/
Complete output (15 lines):
running develop
running egg_info
writing KDEpy.egg-info/PKG-INFO
writing dependency_links to KDEpy.egg-info/dependency_links.txt
writing requirements to KDEpy.egg-info/requires.txt
writing top-level names to KDEpy.egg-info/top_level.txt
reading manifest file 'KDEpy.egg-info/SOURCES.txt'
reading manifest template 'MANIFEST.in'
warning: no files found matching '*.c' under directory 'KDEpy'
writing manifest file 'KDEpy.egg-info/SOURCES.txt'
running build_ext
building 'cutils' extension
gcc -pthread -B /itf-fi-ml/home/thomasaar/.conda/envs/gpus/compiler_compat -Wl,--sysroot=/ -Wno-unused-result -Wsign-compare -DNDEBUG -fwrapv -O2 -Wall -fPIC -O2 -isystem /itf-fi-ml/home/thomasaar/.conda/envs/gpus/include -fPIC -O2 -isystem /itf-fi-ml/home/thomasaar/.conda/envs/gpus/include -fPIC -I/itf-fi-ml/home/thomasaar/.conda/envs/gpus/include/python3.9 -c KDEpy/cutils.c -o build/temp.linux-x86_64-3.9/KDEpy/cutils.o
gcc: error: KDEpy/cutils.c: No such file or directory
error: command '/storage/software/GCCcore/10.2.0/bin/gcc' failed with exit code 1
----------------------------------------
ERROR: Command errored out with exit status 1: /itf-fi-ml/home/thomasaar/.conda/envs/gpus/bin/python3.9 -c 'import io, os, sys, setuptools, tokenize; sys.argv[0] = '"'"'/itf-fi-ml/home/thomasaar/github/KDEpy/setup.py'"'"'; __file__='"'"'/itf-fi-ml/home/thomasaar/github/KDEpy/setup.py'"'"';f = getattr(tokenize, '"'"'open'"'"', open)(__file__) if os.path.exists(__file__) else io.StringIO('"'"'from setuptools import setup; setup()'"'"');code = f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' develop --no-deps Check the logs for full command output.
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