stemsalabim_reading_wrong_error

Project Name: stemsalabim_test
2019-01-10 05:45:34.431 [compute-7-22.local, 0] Hello from compute-7-22.local, MPI rank 0/16, about to spawn 1 threads.
2019-01-10 05:45:34.431 [compute-7-22.local, 1] Hello from compute-7-22.local, MPI rank 1/16, about to spawn 1 threads.
2019-01-10 05:45:34.431 [compute-7-22.local, 2] Hello from compute-7-22.local, MPI rank 2/16, about to spawn 1 threads.
2019-01-10 05:45:34.431 [compute-7-22.local, 3] Hello from compute-7-22.local, MPI rank 3/16, about to spawn 1 threads.
2019-01-10 05:45:34.431 [compute-7-22.local, 4] Hello from compute-7-22.local, MPI rank 4/16, about to spawn 1 threads.
2019-01-10 05:45:34.431 [compute-7-22.local, 5] Hello from compute-7-22.local, MPI rank 5/16, about to spawn 1 threads.
2019-01-10 05:45:34.431 [compute-7-22.local, 6] Hello from compute-7-22.local, MPI rank 6/16, about to spawn 1 threads.
2019-01-10 05:45:34.431 [compute-7-22.local, 7] Hello from compute-7-22.local, MPI rank 7/16, about to spawn 1 threads.
2019-01-10 05:45:34.431 [compute-7-22.local, 11] Hello from compute-7-22.local, MPI rank 11/16, about to spawn 1 threads.
2019-01-10 05:45:34.431 [compute-7-22.local, 12] Hello from compute-7-22.local, MPI rank 12/16, about to spawn 1 threads.
2019-01-10 05:45:34.431 [compute-7-22.local, 14] Hello from compute-7-22.local, MPI rank 14/16, about to spawn 1 threads.
2019-01-10 05:45:34.431 [compute-7-22.local, 15] Hello from compute-7-22.local, MPI rank 15/16, about to spawn 1 threads.
2019-01-10 05:45:34.431 [compute-7-22.local, 8] Hello from compute-7-22.local, MPI rank 8/16, about to spawn 1 threads.
2019-01-10 05:45:34.431 [compute-7-22.local, 9] Hello from compute-7-22.local, MPI rank 9/16, about to spawn 1 threads.
2019-01-10 05:45:34.431 [compute-7-22.local, 10] Hello from compute-7-22.local, MPI rank 10/16, about to spawn 1 threads.
2019-01-10 05:45:34.431 [compute-7-22.local, 13] Hello from compute-7-22.local, MPI rank 13/16, about to spawn 1 threads.
2019-01-10 05:45:34.756 Calculating on a real and k space lattice of 392x392 points.
2019-01-10 05:45:34.756 Calculating 7 defoci, 10 FP confs, 43x43 scan points.
2019-01-10 05:45:34.756 Initialization took 325ms:622us.
2019-01-10 05:45:34.762 Slice 0 [-0.068nm - 0.475nm] contains 32 atoms.
2019-01-10 05:45:34.762 Slice 1 [0.475nm - 1.018nm] contains 32 atoms.
2019-01-10 05:45:34.762 Slice 2 [1.018nm - 1.561nm] contains 32 atoms.
2019-01-10 05:45:34.762 Slice 3 [1.561nm - 2.105nm] contains 32 atoms.
2019-01-10 05:45:34.762 Slice 4 [2.105nm - 2.648nm] contains 32 atoms.
2019-01-10 05:45:34.762 Slice 5 [2.648nm - 3.191nm] contains 32 atoms.
2019-01-10 05:45:34.762 Slice 6 [3.191nm - 3.734nm] contains 32 atoms.
2019-01-10 05:45:34.762 Slice 7 [3.734nm - 4.277nm] contains 32 atoms.
2019-01-10 05:45:34.762 Slice 8 [4.277nm - 4.820nm] contains 32 atoms.
2019-01-10 05:45:34.762 Slice 9 [4.820nm - 5.363nm] contains 32 atoms.
2019-01-10 05:45:34.762 Slice 10 [5.363nm - 5.906nm] contains 32 atoms.
2019-01-10 05:45:34.762 Slice 11 [5.906nm - 6.449nm] contains 32 atoms.
2019-01-10 05:45:34.762 Slice 12 [6.449nm - 6.992nm] contains 32 atoms.
2019-01-10 05:45:34.762 Slice 13 [6.992nm - 7.536nm] contains 32 atoms.
2019-01-10 05:45:34.762 Slice 14 [7.536nm - 8.079nm] contains 32 atoms.
2019-01-10 05:45:34.762 Slice 15 [8.079nm - 8.622nm] contains 32 atoms.
2019-01-10 05:45:34.762 Slice 16 [8.622nm - 9.165nm] contains 32 atoms.
2019-01-10 05:45:34.762 Slice 17 [9.165nm - 9.708nm] contains 32 atoms.
2019-01-10 05:45:34.762 Slice 18 [9.708nm - 10.251nm] contains 32 atoms.
2019-01-10 05:45:34.762 Slice 19 [10.251nm - 10.794nm] contains 32 atoms.
2019-01-10 05:45:34.762 Slice 20 [10.794nm - 11.337nm] contains 32 atoms.
2019-01-10 05:45:34.762 Slice 21 [11.337nm - 11.880nm] contains 32 atoms.
2019-01-10 05:45:34.762 Slice 22 [11.880nm - 12.423nm] contains 32 atoms.
2019-01-10 05:45:34.762 Slice 23 [12.423nm - 12.967nm] contains 32 atoms.
2019-01-10 05:45:34.762 Slice 24 [12.967nm - 13.510nm] contains 32 atoms.
2019-01-10 05:45:34.762 Slice 25 [13.510nm - 14.053nm] contains 32 atoms.
2019-01-10 05:45:34.762 Slice 26 [14.053nm - 14.596nm] contains 32 atoms.
2019-01-10 05:45:34.762 Slice 27 [14.596nm - 15.139nm] contains 32 atoms.
2019-01-10 05:45:34.762 Slice 28 [15.139nm - 15.682nm] contains 32 atoms.
2019-01-10 05:45:34.762 Slice 29 [15.682nm - 16.225nm] contains 32 atoms.
2019-01-10 05:45:34.762 Slice 30 [16.225nm - 16.768nm] contains 32 atoms.
2019-01-10 05:45:34.762 Slice 31 [16.768nm - 17.311nm] contains 32 atoms.
2019-01-10 05:45:34.762 Slice 32 [17.311nm - 17.854nm] contains 32 atoms.
2019-01-10 05:45:34.763 Slice 33 [17.854nm - 18.398nm] contains 32 atoms.
2019-01-10 05:45:34.763 Slice 34 [18.398nm - 18.941nm] contains 32 atoms.
2019-01-10 05:45:34.763 Slice 35 [18.941nm - 19.484nm] contains 32 atoms.
2019-01-10 05:45:34.763 Slice 36 [19.484nm - 20.027nm] contains 32 atoms.
2019-01-10 05:45:34.763 Slice 37 [20.027nm - 20.570nm] contains 0 atoms.
2019-01-10 05:45:34.763 [1/7, 1/10] Starting Defocus -8.00nm.
2019-01-10 05:45:34.763 [1/7, 1/10] Starting configuration. 
2019-01-10 05:45:35.894 [1/7, 1/10] [compute-7-22.local, 3] Finished calculation of transmission functions in 01s:301ms.
2019-01-10 05:45:35.894 [1/7, 1/10] [compute-7-22.local, 1] Finished calculation of transmission functions in 01s:302ms.
2019-01-10 05:45:35.894 [1/7, 1/10] [compute-7-22.local, 2] Finished calculation of transmission functions in 01s:303ms.
2019-01-10 05:45:35.895 [1/7, 1/10] [compute-7-22.local, 9] Finished calculation of transmission functions in 01s:305ms.
2019-01-10 05:45:35.895 [1/7, 1/10] [compute-7-22.local, 13] Finished calculation of transmission functions in 01s:305ms.
2019-01-10 05:45:35.895 [1/7, 1/10] [compute-7-22.local, 11] Finished calculation of transmission functions in 01s:303ms.
2019-01-10 05:45:35.895 [1/7, 1/10] [compute-7-22.local, 12] Finished calculation of transmission functions in 01s:304ms.
2019-01-10 05:45:35.895 [1/7, 1/10] [compute-7-22.local, 4] Finished calculation of transmission functions in 01s:303ms.
2019-01-10 05:45:35.896 [1/7, 1/10] [compute-7-22.local, 5] Finished calculation of transmission functions in 01s:303ms.
2019-01-10 05:45:35.896 [1/7, 1/10] [compute-7-22.local, 14] Finished calculation of transmission functions in 01s:303ms.
2019-01-10 05:45:35.896 [1/7, 1/10] [compute-7-22.local, 10] Finished calculation of transmission functions in 01s:303ms.
2019-01-10 05:45:35.896 [1/7, 1/10] [compute-7-22.local, 7] Finished calculation of transmission functions in 01s:303ms.
2019-01-10 05:45:35.896 [1/7, 1/10] [compute-7-22.local, 8] Finished calculation of transmission functions in 01s:307ms.
2019-01-10 05:45:35.897 [1/7, 1/10] Finished calculation of transmission functions in 01s:123ms.
2019-01-10 05:45:35.898 [1/7, 1/10] [compute-7-22.local, 6] Finished calculation of transmission functions in 01s:305ms.
2019-01-10 05:45:35.898 [1/7, 1/10] [compute-7-22.local, 15] Finished calculation of transmission functions in 01s:307ms.
2019-01-10 05:45:38.715 [1/7, 1/10] progr: 1%, eta/conf: 12m:10s, eta/defocus: 02h:01m:48s, eta/sim: 14h:12m:38s
2019-01-10 05:45:38.717 [1/7, 1/10] progr: 2%, eta/conf: 06m:05s, eta/defocus: 01h:00m:56s, eta/sim: 07h:06m:33s
2019-01-10 05:45:38.737 [1/7, 1/10] progr: 3%, eta/conf: 03m:03s, eta/defocus: 30m:37s, eta/sim: 03h:34m:20s
2019-01-10 05:45:38.749 [1/7, 1/10] progr: 4%, eta/conf: 02m:02s, eta/defocus: 20m:28s, eta/sim: 02h:23m:19s
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2019-01-10 05:45:38.769 [1/7, 1/10] progr: 6%, eta/conf: 01m:14s, eta/defocus: 12m:20s, eta/sim: 01h:26m:25s
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2019-01-10 05:46:06.671 [1/7, 1/10] progr: 84%, eta/conf: 38s:310ms, eta/defocus: 06m:23s, eta/sim: 44m:41s
2019-01-10 05:46:06.750 [1/7, 1/10] progr: 85%, eta/conf: 37s:913ms, eta/defocus: 06m:19s, eta/sim: 44m:13s
2019-01-10 05:46:06.757 [1/7, 1/10] progr: 86%, eta/conf: 37s:441ms, eta/defocus: 06m:14s, eta/sim: 43m:40s
2019-01-10 05:46:06.770 [1/7, 1/10] progr: 87%, eta/conf: 36s:988ms, eta/defocus: 06m:09s, eta/sim: 43m:09s
2019-01-10 05:46:06.772 [1/7, 1/10] progr: 88%, eta/conf: 36s:761ms, eta/defocus: 06m:07s, eta/sim: 42m:53s
2019-01-10 05:46:06.934 [1/7, 1/10] progr: 89%, eta/conf: 36s:493ms, eta/defocus: 06m:04s, eta/sim: 42m:34s
2019-01-10 05:46:07.378 [1/7, 1/10] progr: 90%, eta/conf: 36s:549ms, eta/defocus: 06m:05s, eta/sim: 42m:38s
2019-01-10 05:46:09.420 [1/7, 1/10] progr: 91%, eta/conf: 38s:371ms, eta/defocus: 06m:23s, eta/sim: 44m:46s
2019-01-10 05:46:09.448 [1/7, 1/10] progr: 92%, eta/conf: 37s:949ms, eta/defocus: 06m:19s, eta/sim: 44m:16s
2019-01-10 05:46:09.538 [1/7, 1/10] progr: 93%, eta/conf: 37s:601ms, eta/defocus: 06m:16s, eta/sim: 43m:52s
2019-01-10 05:46:09.538 [1/7, 1/10] [compute-7-22.local, 9] Finished working for 33s:642ms and calculated 120 pixels.
2019-01-10 05:46:09.544 [1/7, 1/10] progr: 94%, eta/conf: 37s:389ms, eta/defocus: 06m:13s, eta/sim: 43m:37s
2019-01-10 05:46:09.544 [1/7, 1/10] [compute-7-22.local, 11] Finished working for 33s:648ms and calculated 120 pixels.
2019-01-10 05:46:09.549 [1/7, 1/10] [compute-7-22.local, 12] Finished working for 33s:654ms and calculated 120 pixels.
2019-01-10 05:46:09.559 [1/7, 1/10] [compute-7-22.local, 15] Finished working for 33s:660ms and calculated 120 pixels.
2019-01-10 05:46:09.559 [1/7, 1/10] progr: 95%, eta/conf: 36s:975ms, eta/defocus: 06m:09s, eta/sim: 43m:08s
2019-01-10 05:46:09.565 [1/7, 1/10] [compute-7-22.local, 14] Finished working for 33s:668ms and calculated 120 pixels.
2019-01-10 05:46:09.592 [1/7, 1/10] progr: 96%, eta/conf: 36s:591ms, eta/defocus: 06m:05s, eta/sim: 42m:41s
2019-01-10 05:46:09.592 [1/7, 1/10] [compute-7-22.local, 5] Finished working for 33s:696ms and calculated 120 pixels.
2019-01-10 05:46:09.729 [1/7, 1/10] [compute-7-22.local, 8] Finished working for 33s:832ms and calculated 120 pixels.
2019-01-10 05:46:09.911 [1/7, 1/10] progr: 97%, eta/conf: 36s:510ms, eta/defocus: 06m:05s, eta/sim: 42m:35s
2019-01-10 05:46:09.911 [1/7, 1/10] [compute-7-22.local, 7] Finished working for 34s:014ms and calculated 120 pixels.
2019-01-10 05:46:10.032 [1/7, 1/10] [compute-7-22.local, 2] Finished working for 34s:137ms and calculated 120 pixels.
2019-01-10 05:46:10.167 [1/7, 1/10] progr: 98%, eta/conf: 36s:368ms, eta/defocus: 06m:03s, eta/sim: 42m:25s
2019-01-10 05:46:10.167 [1/7, 1/10] [compute-7-22.local, 10] Finished working for 34s:270ms and calculated 120 pixels.
2019-01-10 05:46:12.015 [1/7, 1/10] [compute-7-22.local, 6] Finished working for 36s:116ms and calculated 129 pixels.
2019-01-10 05:46:12.151 [1/7, 1/10] progr: 99%, eta/conf: 38s:005ms, eta/defocus: 06m:20s, eta/sim: 44m:20s
2019-01-10 05:46:12.151 [1/7, 1/10] [compute-7-22.local, 4] Finished working for 36s:255ms and calculated 130 pixels.
2019-01-10 05:46:12.189 [1/7, 1/10] [compute-7-22.local, 1] Finished working for 36s:294ms and calculated 130 pixels.
2019-01-10 05:46:12.197 [1/7, 1/10] progr: 100%, eta/conf: 37s:637ms, eta/defocus: 06m:16s, eta/sim: 43m:54s
2019-01-10 05:46:12.197 [1/7, 1/10] [compute-7-22.local, 13] Finished working for 36s:301ms and calculated 130 pixels.
2019-01-10 05:46:12.210 [1/7, 1/10] Received all results, calculation took 36s:313ms.
2019-01-10 05:46:12.210 [1/7, 1/10] [compute-7-22.local, 3] Finished working for 36s:315ms and calculated 130 pixels.
 -- Error --
Reading wrong temporary file!