thouis

      for count, gene in countgenes:
            name = wx.StaticText(self, -1, gene)
            name.BackgroundColour = '#ffffff'
            self.grid_sizer.Add(name, 0, wx.EXPAND)
            c = wx.StaticText(self, -1, "%d"%(count))
            self.grid_sizer.Add(c, 0, wx.EXPAND)
            b1 = wx.RadioButton(self, -1, style=wx.RB_GROUP)
            b1.BackgroundColour = '#ffffff'
            b1.Alignment = wx.ALIGN_CENTER_HORIZONTAL
            self.grid_sizer.Add(b1, flag=wx.ALIGN_CENTER|wx.EXPAND)

thouis

# http://thp.io/2007/09/x11-idle-time-and-focused-window-in.html
# http://www.freedesktop.org/software/ConsoleKit/doc/ConsoleKit.html#Session:idle-hint



import Xlib.display
display = Xlib.display.Display()
focus = display.get_input_focus()
print "WM Class: %s" % ( focus.focus.get_wm_class(), )
print "WM Name: %s" % ( focus.focus.get_wm_name(), )

thouis

"""Measurements.py - storage for image and object measurements

CellProfiler is distributed under the GNU General Public License.
See the accompanying file LICENSE for details.

Copyright (c) 2003-2009 Massachusetts Institute of Technology
Copyright (c) 2009-2011 Broad Institute
All rights reserved.

Please see the AUTHORS file for credits.

thouis

import xlrd
import sys
import numpy as np

book = xlrd.open_workbook(sys.argv[1])
sheet = book.sheet_by_name('Normalization 1')
headers = [c.value for c in sheet.row(0)]

# find columns
colidx = dict([(name, headers.index(name)) for name in ['Gene', 'rep1', 'rep2', 'rep3']])

thouis

;;; from http://richardriley.net/projects/emacs/dotprogramming#sec-1.5
(when (load "flymake" t)
  (defun flymake-pycheckers-init ()
    (let* ((temp-file (flymake-init-create-temp-buffer-copy
                       'flymake-create-temp-inplace))
           (local-file (file-relative-name
                        temp-file
                        (file-name-directory buffer-file-name))))
      (list "/Users/tjones/elisp/pycheckers.sh"  (list local-file)))))

thouis

    def recalculate_group(self, workspace, indexes):
        '''Recalculate all measurements once post_group has run
        
        workspace - the workspace being operated on
        indexes - the indexes of the group's image sets' measurements
        '''
        m = workspace.measurements
        object_name = self.object_name.value
        assert isinstance(m, cpmeas.Measurements)
        parent_object_numbers = m.get_all_measurements(

thouis

#!/bin/sh

# TODO: check for virtualenv
# TODO: verify python is universal 32+64 bit

virtualenv -p /Library/Frameworks/Python.framework/Versions/2.7/bin/python --no-site-packages ${1}/cpdev
. ${1}/cpdev/bin/activate

pip install -U pip # to get git+https

thouis

import cpscript
from scipy import ndimage

labels = cpscript.Cells.segmented
background_labels = np.array(labels == 0, dtype=int)

dt_labels = ndimage.distance_transform_edt(background_labels)

imVSVG_pixels = cpscript.imVSVG.pixel_data
imVSVG_dt_pixels = imVSVG_pixels * dt_labels

thouis

##########################################################################
# Maximum Response filterbank from
# http://www.robots.ox.ac.uk/~vgg/research/texclass/filters.html
# based on several edge and bar filters.
# Adapted to Python by Andreas Mueller amueller@ais.uni-bonn.de
# Share and enjoy
#

import numpy as np
import matplotlib.pyplot as plt

thouis