| <!DOCTYPE html> | |
| <html> | |
| <body> | |
| <p>Discovery Park</p> | |
| <button onclick="showMap('Discovery Park')">View Map</button> | |
| <button onclick="showDirections('Discovery Park')">View Directions</button> |
| %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% | |
| % | |
| % This script performs clustering of the trials by first reducing the | |
| % dimension with classical multidimensional scaling, and then running | |
| % kmeans clustering. The clustered trials are visualized by plotting | |
| % the first two (MDS) dimensions. | |
| % | |
| %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% | |
| % read the data |
| function dataset = createDatasetForVolume(s, volume, filename) | |
| %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% | |
| % | |
| % | |
| % | |
| %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% | |
| function dataset = cluster_volumes(s) | |
| for vol = 1:10 | |
| trials = s.timeSeriesArrayHash.value{vol+1}.trial; | |
| % times = s.timeSeriesArrayHash.value{volume+1}.time; | |
| % rel_dF = s.timeSeriesArrayHash.value{volume+1}.valueMatrix; | |
| trial_ids = unique(trials); |
| <!DOCTYPE html> | |
| <html> | |
| <head><meta charset="utf-8" /> | |
| <title>NumberOfTopicsSelection</title> | |
| <script src="https://cdnjs.cloudflare.com/ajax/libs/require.js/2.1.10/require.min.js"></script> | |
| <script src="https://cdnjs.cloudflare.com/ajax/libs/jquery/2.0.3/jquery.min.js"></script> | |
| <style type="text/css"> | |
| /*! |
Instructions to run the tutorial notebooks for the [Allen Brain Observatory dataset] (http://observatory.brain-map.org/visualcoding/sdk/index).
Install Python from https://www.continuum.io/downloads.
Install git https://git-scm.com/book/en/v2/Getting-Started-Installing-Git
(On Windows use git bash as a shell to run the following commands)
On Instance:
pip install jupyter[notebook]
jupyter notebook --generate-config
# nano .jupyter/jupyter_notebook_config.py
echo "c = get_config()
c.NotebookApp.ip = '*'