slowkow

#!/usr/bin/env bash
# sra-paired.sh
# Kamil Slowikowski
# April 23, 2014
#
# Check if an SRA file contains paired-end sequencing data.
#
# See documentation for the SRA Toolkit:
# http://www.ncbi.nlm.nih.gov/Traces/sra/sra.cgi?view=toolkit_doc&f=fastq-dump

davfre

git cheat-sheet

The git command-line utility has plenty of inconsistencies http://steveko.wordpress.com/2012/02/24/10-things-i-hate-about-git/

A GUI like http://sourcetreeapp.com is often helpful, but staying on the command line usually quicker. This is a list of the commands I use most frequently, listed by functional category:

Current state

git status list which (unstaged) files have changed