-
-
Save wchristian/acb06503e968e78d3e35 to your computer and use it in GitHub Desktop.
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
13-06-18@12:03:33 ¹º¹º Join» (mib_392hv6) (75e37158@109.169.29.95) | |
13-06-18@12:03:43 (mib_392hv6) hello | |
13-06-18@12:03:55 ººº¹ Join» (xlat) (~Nicolas@219.137.229.214) | |
13-06-18@12:04:09 (mib_392hv6) hello | |
13-06-18@12:04:32 (daxim) hello, just go ahead and type | |
13-06-18@12:05:23 (mib_392hv6) how to use notepad++ for strawberry perl | |
13-06-18@12:05:44 (mib_392hv6) need instruction from your side | |
13-06-18@12:06:31 (daxim) type your programs into the editor, then save the files with the customary extensions .pm (for modules) or .pl (for programs) | |
13-06-18@12:08:26 (mib_392hv6) in a new file i have to do same thingh | |
13-06-18@12:08:32 (mib_392hv6) am i right | |
13-06-18@12:09:24 (daxim) yes, certainly. you always have to save a program first before you are able to run in with perl. | |
13-06-18@12:09:45 (daxim) perhaps you explain a bit more if you expect something different | |
13-06-18@12:12:05 (mib_392hv6) sir,its means i have to write programme into the editor then save with extensions.pl and the run | |
13-06-18@12:13:03 (mib_392hv6) i have a another query | |
13-06-18@12:14:01 (mib_392hv6) http://pgrc.ipk-gatersleben.de/misa/misa.html why this link not working for window | |
13-06-18@12:14:02 (+dipsy) [ MISA - microsatellite searching tool ] | |
13-06-18@12:14:52 (mib_392hv6) however developer told it for all o.s | |
13-06-18@12:14:58 (mib_392hv6) pl reply | |
13-06-18@12:16:07 ¹¹¹º Quit» (mib_392hv6) (75e37158@109.169.29.95) (Quit: http://www.mibbit.com ajax IRC Client) | |
13-06-18@12:17:56 ¹ººº Join» (mib_s4c1yb) (75e37158@ircip1.mibbit.com) | |
13-06-18@12:19:19 ¹ºº¹ Join» (Jamaica) (~Jamaica@85.158.178.111) | |
13-06-18@12:19:20 (mib_s4c1yb) hello | |
13-06-18@12:19:34 (@Mithaldu) hey | |
13-06-18@12:21:58 (mib_s4c1yb) http://pgrc.ipk-gatersleben.de/misa/misa.html | |
13-06-18@12:21:58 (+dipsy) [ MISA - microsatellite searching tool ] | |
13-06-18@12:22:23 (mib_s4c1yb) why its not working for window | |
13-06-18@12:22:34 (@Mithaldu) what do you mean with "not working"? | |
13-06-18@12:22:38 (@Mithaldu) does the perl script crash? | |
13-06-18@12:22:56 (daxim) do you realise you need a fasta input file? do you have one? | |
13-06-18@12:23:13 (mib_s4c1yb) yes i have | |
13-06-18@12:23:43 (mib_s4c1yb) just downloaded strawberry perl | |
13-06-18@12:23:53 (mib_s4c1yb) and then notepad++ | |
13-06-18@12:24:12 (mib_s4c1yb) now trying to download MISA | |
13-06-18@12:24:21 (daxim) you need to run this program from the command-line. notepad++ does not have sufficient integration | |
13-06-18@12:24:29 (@Mithaldu) right-click, save as | |
13-06-18@12:25:11 (daxim) I recommend you learn to use the command-line properly, or run a better editor/integrated development environment such as Padre IDE or ActiveState Komodo | |
13-06-18@12:25:32 (mib_s4c1yb) please clear gain not able to learn | |
13-06-18@12:25:50 (mib_s4c1yb) what you are saying | |
13-06-18@12:26:16 (daxim) I'm saying, you can't this program from within notepad++ -- you will not see the output | |
13-06-18@12:26:48 (daxim) use something better. http://padre.perlide.org http://activestate.com/komodo | |
13-06-18@12:26:51 (+dipsy) [ Padre, the Perl IDE ] [ Komodo IDE: Professional IDE for Python, PHP, Ruby, Perl, HTML, CSS, JavaScript ] | |
13-06-18@12:28:28 (mib_s4c1yb) can i download it for window | |
13-06-18@12:28:51 (@Mithaldu) click the download link | |
13-06-18@12:28:57 (@Mithaldu) there's a whole thing for windows | |
13-06-18@12:29:42 (mib_s4c1yb) now its downloading | |
13-06-18@12:30:16 (mib_s4c1yb) sir,MISA not downloading for window pl help me | |
13-06-18@12:30:34 ºº¹¹ Quit» (xlat) (~Nicolas@219.137.229.214) (Remote host closed the connection) | |
13-06-18@12:31:13 (mib_s4c1yb) i want to run misa through perl | |
13-06-18@12:31:18 (@Mithaldu) mib_s4c1yb: right-click the link and click "save as" | |
13-06-18@12:31:36 º¹º¹ Join» (xlat) (~Nicolas@219.137.229.214) | |
13-06-18@12:31:52 (mib_s4c1yb) MISA not downloading for window pl help me | |
13-06-18@12:32:20 (mib_s4c1yb) how it will install for window | |
13-06-18@12:32:57 (@Mithaldu) please describe in more detail how it is not downloading | |
13-06-18@12:32:59 (daxim) this is not something you install - you run it from the command-line or from an IDE, do you know what this means? | |
13-06-18@12:34:26 (mib_s4c1yb) i want to download http://pgrc.ipk-gatersleben.de/misa/misa.html | |
13-06-18@12:34:27 (+dipsy) [ MISA - microsatellite searching tool ] | |
13-06-18@12:34:56 (mib_s4c1yb) on window o.s | |
13-06-18@12:36:22 (@Mithaldu) mib_s4c1yb: what happens when you click on "Download MISA" on that page? | |
13-06-18@12:37:30 (mib_s4c1yb) a new page open with !/usr/bin/perl -w | |
13-06-18@12:37:53 (@Mithaldu) ok | |
13-06-18@12:37:56 (@Mithaldu) go one back | |
13-06-18@12:38:05 (@Mithaldu) right-click that link, click on "save as" | |
13-06-18@12:38:08 (daxim) when Mithaldu said, right-click, he means the *other* mouse button | |
13-06-18@12:38:11 (@Mithaldu) or the equivalent in your language | |
13-06-18@12:39:30 (mib_s4c1yb) right-click that link, click on "save as" | |
13-06-18@12:39:42 (mib_s4c1yb) then sir | |
13-06-18@12:40:18 (@Mithaldu) then choose a place on your harddrive to save it at | |
13-06-18@12:40:21 (mib_s4c1yb) i have saved it | |
13-06-18@12:40:24 (@Mithaldu) great | |
13-06-18@12:41:02 (mib_s4c1yb) what next | |
13-06-18@12:41:26 (@Mithaldu) now copy the fasta input file to the same place you saved the .pl file at | |
13-06-18@12:44:25 (mib_s4c1yb) sir pl clear gain | |
13-06-18@12:44:37 (@Mithaldu) please rephrase that, i do not understand | |
13-06-18@12:45:00 (mib_s4c1yb) now copy the fasta input file to the same place you saved the .pl file at | |
13-06-18@12:45:33 (@Mithaldu) in what directory did you save the misa.pl file? | |
13-06-18@12:46:19 (mib_s4c1yb) in c drive | |
13-06-18@12:46:33 (@Mithaldu) directly in c:\? | |
13-06-18@12:46:41 (@Mithaldu) not into a directory on your c drive? | |
13-06-18@12:48:18 (mib_s4c1yb) yes sir putted it in c:\ directly | |
13-06-18@12:48:22 (@Mithaldu) great | |
13-06-18@12:48:26 (@Mithaldu) click start | |
13-06-18@12:48:29 (@Mithaldu) click run | |
13-06-18@12:48:33 (@Mithaldu) enter cmd | |
13-06-18@12:48:37 (@Mithaldu) hit the enter key | |
13-06-18@12:48:47 (@Mithaldu) do you see a black window with some text in it? | |
13-06-18@12:49:58 (daxim) that window should look like this: https://google.com/search?tbm=isch&q=cmd+window | |
13-06-18@12:51:01 (mib_s4c1yb) sir it just open and close | |
13-06-18@12:51:21 (mib_s4c1yb) whats going wrong now sir | |
13-06-18@12:51:29 (@Mithaldu) exactly what text did you enter into the "run" box? | |
13-06-18@12:51:46 (@Mithaldu) or maybe better: | |
13-06-18@12:51:51 (@Mithaldu) exactly what text did you type into the "run" box? | |
13-06-18@12:53:17 (mib_s4c1yb) saved file putted it in c:\ directly | |
13-06-18@12:53:45 (@Mithaldu) that was not what i asked | |
13-06-18@12:53:48 (@Mithaldu) let me try this again | |
13-06-18@12:53:51 (@Mithaldu) click start | |
13-06-18@12:53:53 (@Mithaldu) click run | |
13-06-18@12:54:00 (@Mithaldu) type "cmd" | |
13-06-18@12:54:03 (mib_s4c1yb) which on | |
13-06-18@12:54:04 (@Mithaldu) hit enter | |
13-06-18@12:54:09 (@Mithaldu) try that | |
13-06-18@12:54:23 (mib_s4c1yb) here is query sir | |
13-06-18@12:54:39 (@Mithaldu) ask | |
13-06-18@12:54:56 (@Mithaldu) or do you mean you are seeing the command line shell now? | |
13-06-18@12:55:01 (mib_s4c1yb) where i have to click for start | |
13-06-18@12:55:12 (mib_s4c1yb) which file | |
13-06-18@12:55:16 (@Mithaldu) are you on windows xp? | |
13-06-18@12:55:29 (mib_s4c1yb) window7 | |
13-06-18@12:55:48 (@Mithaldu) bottom left corner, the windows icon in the circle | |
13-06-18@12:56:46 (mib_s4c1yb) yes sir | |
13-06-18@12:56:59 (mib_s4c1yb) what next | |
13-06-18@12:57:24 (@Mithaldu) do you see a box where it says "Search programs and files"? | |
13-06-18@12:57:32 (@Mithaldu) if so, type cmd in there and hit enter | |
13-06-18@12:58:55 (mib_s4c1yb) yes sir | |
13-06-18@12:59:18 (mib_s4c1yb) cdm.cif.gz available | |
13-06-18@12:59:32 (@Mithaldu) cmd | |
13-06-18@12:59:34 (@Mithaldu) not cdm | |
13-06-18@13:00:26 ¹ºº¹ Join» (bloonix) (~bloonix@dev.bloonix.de) | |
13-06-18@13:00:34 (mib_s4c1yb) yes sir a new window open | |
13-06-18@13:00:52 (@Mithaldu) type cd c:\ | |
13-06-18@13:00:54 (@Mithaldu) and hit enter | |
13-06-18@13:02:23 (mib_s4c1yb) typed it and enter | |
13-06-18@13:02:39 (@Mithaldu) type dir and hit enter | |
13-06-18@13:02:48 (@Mithaldu) then look if you see the misa pl script | |
13-06-18@13:04:19 (mib_s4c1yb) now i am seeing it | |
13-06-18@13:04:35 (@Mithaldu) now type perl -v | |
13-06-18@13:04:38 (@Mithaldu) and hit enter | |
13-06-18@13:04:47 (@Mithaldu) then tell me what you see | |
13-06-18@13:07:30 (mib_s4c1yb) perl-v is not recognised as internal or external command,operable programme or batch file | |
13-06-18@13:07:42 (@Mithaldu) did you install strawberry perl? | |
13-06-18@13:07:52 (mib_s4c1yb) yes sir | |
13-06-18@13:07:52 (@Mithaldu) if not, do that now | |
13-06-18@13:08:00 (@Mithaldu) well ... | |
13-06-18@13:08:05 (@Mithaldu) wait | |
13-06-18@13:08:08 (@Mithaldu) you type perl-v | |
13-06-18@13:08:10 (@Mithaldu) i said | |
13-06-18@13:08:12 (@Mithaldu) perl -v | |
13-06-18@13:08:16 (@Mithaldu) there's a space inbetween | |
13-06-18@13:08:42 (@Mithaldu) daxim: if you're up to it, you're gonna have to take over here, we need to go get the lunch we ordered | |
13-06-18@13:09:29 (daxim) I decline. is someone else here willing to take over? | |
13-06-18@13:10:00 (@Mithaldu) mib_s4c1yb: download this and read it: http://onyxneon.com/books/modern_perl/modern_perl_a4.pdf | |
13-06-18@13:10:01 (+dipsy) [ ] | |
13-06-18@13:10:09 (@Mithaldu) maybe it will help you further while i'm away | |
13-06-18@13:10:12 ºº¹º Quit» (xlat) (~Nicolas@219.137.229.214) (Remote host closed the connection) | |
13-06-18@13:10:19 (@Mithaldu) otherwise i'll be back in an hour or two | |
13-06-18@13:10:37 (mib_s4c1yb) sir its working | |
13-06-18@13:10:41 (mib_s4c1yb) hello sir | |
13-06-18@13:10:59 ºº¹¹ Join» (CSJewell) (~CSJewell@189.251.sfcn.org) | |
13-06-18@13:11:21 (mib_s4c1yb) let me know mail id i want to in touch | |
13-06-18@13:11:24 ¹ººº Join» (xlat) (~Nicolas@219.137.229.214) | |
13-06-18@13:11:35 (@Mithaldu) i will be back in an hour or two and i'm always in this channel | |
13-06-18@13:11:39 (@Mithaldu) so try back later | |
13-06-18@13:12:00 (mib_s4c1yb) i will wait | |
13-06-18@13:12:17 (mib_s4c1yb) sir you are from | |
13-06-18@13:30:43 ¹ººº Quit» (mib_s4c1yb) (75e37158@ircip1.mibbit.com) (Quit: http://www.mibbit.com ajax IRC Client) | |
13-06-18@13:40:42 ¹¹¹º Join» (mib_iakeov) (75e37158@ircip2.mibbit.com) | |
13-06-18@13:42:26 (mib_iakeov) hello | |
13-06-18@13:42:26 (+dipsy) hey, mib_iakeov | |
13-06-18@13:43:24 (mib_iakeov) pl tell me command for fasta input file into perl | |
13-06-18@13:46:12 (mib_iakeov) hello | |
13-06-18@13:51:35 (jamesw) dipsy is a bot | |
13-06-18@13:56:33 (jamesw) perl misa.pl | |
13-06-18@13:56:36 (jamesw) tried that? | |
13-06-18@13:59:06 (mib_iakeov) ok sir | |
13-06-18@14:01:50 (@Mithaldu) back | |
13-06-18@14:01:53 (mib_iakeov) when i tried it ,its shows does not exist | |
13-06-18@14:02:23 (@Mithaldu) can you take a screenshot? | |
13-06-18@14:02:52 (mib_iakeov) ,its shows fasta file does not exist | |
13-06-18@14:03:11 (@Mithaldu) aHA | |
13-06-18@14:03:21 (@Mithaldu) is your fasta file in c:\ ? | |
13-06-18@14:03:41 (mib_iakeov) no sir | |
13-06-18@14:03:50 (@Mithaldu) copy it there then | |
13-06-18@14:04:24 (mib_iakeov) in c drive | |
13-06-18@14:04:55 (@Mithaldu) copy the fasta file to c:\ | |
13-06-18@14:05:18 (mib_iakeov) ok sir | |
13-06-18@14:06:26 (mib_iakeov) what next sir | |
13-06-18@14:07:09 (mib_iakeov) hello sir | |
13-06-18@14:07:24 (mib_iakeov) what next sir | |
13-06-18@14:08:40 (@Mithaldu) perl misa.pl fasta_file_name | |
13-06-18@14:09:13 (mib_iakeov) doing it | |
13-06-18@14:11:47 (mib_iakeov) it shows fasta file not exist | |
13-06-18@14:11:52 (mib_iakeov) help me sir | |
13-06-18@14:12:56 (@Mithaldu) sec | |
13-06-18@14:13:21 (@Mithaldu) what is the name of the fasta file? | |
13-06-18@14:13:49 (mib_iakeov) swati6 | |
13-06-18@14:14:30 (@Mithaldu) and you entered | |
13-06-18@14:14:36 (@Mithaldu) perl misa.pl swati6 | |
13-06-18@14:14:39 (@Mithaldu) correct? | |
13-06-18@14:14:40 (+dipsy) redact | |
13-06-18@14:15:33 (mib_iakeov) i had putted perl misa.pl swati6 | |
13-06-18@14:15:46 (@Mithaldu) and swati6 is in c:\ | |
13-06-18@14:15:50 (@Mithaldu) not in a sub directory? | |
13-06-18@14:16:02 (jamesw) is it swati6 no extension? | |
13-06-18@14:16:18 (mib_iakeov) it is in a folder in c drive | |
13-06-18@14:17:09 (@Mithaldu) copy it to c:\ | |
13-06-18@14:17:14 (@Mithaldu) not into a directory | |
13-06-18@14:17:46 (mib_iakeov) i had putted all fasta files in c drive in a single folder | |
13-06-18@14:18:18 (@Mithaldu) well you can also copy misa.pl into that folder | |
13-06-18@14:18:20 (@Mithaldu) and type | |
13-06-18@14:18:25 (@Mithaldu) cd folder | |
13-06-18@14:18:37 (@Mithaldu) and then type perl misa.pl fasta_file there | |
13-06-18@14:20:27 (mib_iakeov) mean to say i have to cut and paste misa.pl file into fasta folder and edit its name as cd folder | |
13-06-18@14:20:45 (@Mithaldu) no | |
13-06-18@14:20:49 (mib_iakeov) am i right sir | |
13-06-18@14:20:57 (@Mithaldu) you copy and paste the misa.pl file into the fasta directory | |
13-06-18@14:21:04 (@Mithaldu) then go to the black window with the command prompt | |
13-06-18@14:21:06 (@Mithaldu) and type | |
13-06-18@14:21:14 (@Mithaldu) cd fasta_directory | |
13-06-18@14:24:31 (mib_iakeov) sir its shows system can not find the path specified | |
13-06-18@14:25:26 (mib_iakeov) sir pl resolved it | |
13-06-18@14:27:24 (@Mithaldu) did you manage to cd into the directory? | |
13-06-18@14:28:19 (mib_iakeov) i have text editor notepad++ | |
13-06-18@14:28:27 (mib_iakeov) for perl | |
13-06-18@14:28:30 (@Mithaldu) you did not answer my question | |
13-06-18@14:28:45 (@Mithaldu) did you manage to cd into the fasta directory? | |
13-06-18@14:29:04 (mib_iakeov) no sir ,if you guide me i can try | |
13-06-18@14:29:28 (@Mithaldu) well, what is the full path of the directory on your c drive? | |
13-06-18@14:31:30 (mib_iakeov) computer>local disk(c:) | |
13-06-18@14:31:53 (@Mithaldu) i mean the full path of the fasta directory |
Sign up for free
to join this conversation on GitHub.
Already have an account?
Sign in to comment