secret
Created

  • Download Gist
gistfile1.txt
1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107 108 109 110 111 112 113 114 115 116 117 118 119 120 121 122 123 124 125 126 127 128 129 130 131 132 133 134 135 136 137 138 139 140 141 142 143 144 145 146 147 148 149 150 151 152 153 154 155 156 157 158 159 160 161 162 163 164 165 166 167 168 169 170 171 172 173 174 175 176 177 178 179 180 181 182 183 184 185 186 187 188 189 190 191 192 193 194 195 196 197 198 199 200 201 202 203 204 205 206 207 208 209 210 211 212 213 214 215 216 217 218
13-06-18@12:03:33 ¹º¹º Join» (mib_392hv6) (75e37158@109.169.29.95)
13-06-18@12:03:43 (mib_392hv6) hello
13-06-18@12:03:55 ººº¹ Join» (xlat) (~Nicolas@219.137.229.214)
13-06-18@12:04:09 (mib_392hv6) hello
13-06-18@12:04:32 (daxim) hello, just go ahead and type
13-06-18@12:05:23 (mib_392hv6) how to use notepad++ for strawberry perl
13-06-18@12:05:44 (mib_392hv6) need instruction from your side
13-06-18@12:06:31 (daxim) type your programs into the editor, then save the files with the customary extensions .pm (for modules) or .pl (for programs)
13-06-18@12:08:26 (mib_392hv6) in a new file i have to do same thingh
13-06-18@12:08:32 (mib_392hv6) am i right
13-06-18@12:09:24 (daxim) yes, certainly. you always have to save a program first before you are able to run in with perl.
13-06-18@12:09:45 (daxim) perhaps you explain a bit more if you expect something different
13-06-18@12:12:05 (mib_392hv6) sir,its means i have to write programme into the editor then save with extensions.pl and the run
13-06-18@12:13:03 (mib_392hv6) i have a another query
13-06-18@12:14:01 (mib_392hv6) http://pgrc.ipk-gatersleben.de/misa/misa.html why this link not working for window
13-06-18@12:14:02 (+dipsy) [ MISA - microsatellite searching tool ]
13-06-18@12:14:52 (mib_392hv6) however developer told it for all o.s
13-06-18@12:14:58 (mib_392hv6) pl reply
13-06-18@12:16:07 ¹¹¹º Quit» (mib_392hv6) (75e37158@109.169.29.95) (Quit: http://www.mibbit.com ajax IRC Client)
13-06-18@12:17:56 ¹ººº Join» (mib_s4c1yb) (75e37158@ircip1.mibbit.com)
13-06-18@12:19:19 ¹ºº¹ Join» (Jamaica) (~Jamaica@85.158.178.111)
13-06-18@12:19:20 (mib_s4c1yb) hello
13-06-18@12:19:34 (@Mithaldu) hey
13-06-18@12:21:58 (mib_s4c1yb) http://pgrc.ipk-gatersleben.de/misa/misa.html
13-06-18@12:21:58 (+dipsy) [ MISA - microsatellite searching tool ]
13-06-18@12:22:23 (mib_s4c1yb) why its not working for window
13-06-18@12:22:34 (@Mithaldu) what do you mean with "not working"?
13-06-18@12:22:38 (@Mithaldu) does the perl script crash?
13-06-18@12:22:56 (daxim) do you realise you need a fasta input file? do you have one?
13-06-18@12:23:13 (mib_s4c1yb) yes i have
13-06-18@12:23:43 (mib_s4c1yb) just downloaded strawberry perl
13-06-18@12:23:53 (mib_s4c1yb) and then notepad++
13-06-18@12:24:12 (mib_s4c1yb) now trying to download MISA
13-06-18@12:24:21 (daxim) you need to run this program from the command-line. notepad++ does not have sufficient integration
13-06-18@12:24:29 (@Mithaldu) right-click, save as
13-06-18@12:25:11 (daxim) I recommend you learn to use the command-line properly, or run a better editor/integrated development environment such as Padre IDE or ActiveState Komodo
13-06-18@12:25:32 (mib_s4c1yb) please clear gain not able to learn
13-06-18@12:25:50 (mib_s4c1yb) what you are saying
13-06-18@12:26:16 (daxim) I'm saying, you can't this program from within notepad++ -- you will not see the output
13-06-18@12:26:48 (daxim) use something better. http://padre.perlide.org http://activestate.com/komodo
13-06-18@12:26:51 (+dipsy) [ Padre, the Perl IDE ] [ Komodo IDE: Professional IDE for Python, PHP, Ruby, Perl, HTML, CSS, JavaScript ]
13-06-18@12:28:28 (mib_s4c1yb) can i download it for window
13-06-18@12:28:51 (@Mithaldu) click the download link
13-06-18@12:28:57 (@Mithaldu) there's a whole thing for windows
13-06-18@12:29:42 (mib_s4c1yb) now its downloading
13-06-18@12:30:16 (mib_s4c1yb) sir,MISA not downloading for window pl help me
13-06-18@12:30:34 ºº¹¹ Quit» (xlat) (~Nicolas@219.137.229.214) (Remote host closed the connection)
13-06-18@12:31:13 (mib_s4c1yb) i want to run misa through perl
13-06-18@12:31:18 (@Mithaldu) mib_s4c1yb: right-click the link and click "save as"
13-06-18@12:31:36 º¹º¹ Join» (xlat) (~Nicolas@219.137.229.214)
13-06-18@12:31:52 (mib_s4c1yb) MISA not downloading for window pl help me
13-06-18@12:32:20 (mib_s4c1yb) how it will install for window
13-06-18@12:32:57 (@Mithaldu) please describe in more detail how it is not downloading
13-06-18@12:32:59 (daxim) this is not something you install - you run it from the command-line or from an IDE, do you know what this means?
13-06-18@12:34:26 (mib_s4c1yb) i want to download http://pgrc.ipk-gatersleben.de/misa/misa.html
13-06-18@12:34:27 (+dipsy) [ MISA - microsatellite searching tool ]
13-06-18@12:34:56 (mib_s4c1yb) on window o.s
13-06-18@12:36:22 (@Mithaldu) mib_s4c1yb: what happens when you click on "Download MISA" on that page?
13-06-18@12:37:30 (mib_s4c1yb) a new page open with !/usr/bin/perl -w
13-06-18@12:37:53 (@Mithaldu) ok
13-06-18@12:37:56 (@Mithaldu) go one back
13-06-18@12:38:05 (@Mithaldu) right-click that link, click on "save as"
13-06-18@12:38:08 (daxim) when Mithaldu said, right-click, he means the *other* mouse button
13-06-18@12:38:11 (@Mithaldu) or the equivalent in your language
13-06-18@12:39:30 (mib_s4c1yb) right-click that link, click on "save as"
13-06-18@12:39:42 (mib_s4c1yb) then sir
13-06-18@12:40:18 (@Mithaldu) then choose a place on your harddrive to save it at
13-06-18@12:40:21 (mib_s4c1yb) i have saved it
13-06-18@12:40:24 (@Mithaldu) great
13-06-18@12:41:02 (mib_s4c1yb) what next
13-06-18@12:41:26 (@Mithaldu) now copy the fasta input file to the same place you saved the .pl file at
13-06-18@12:44:25 (mib_s4c1yb) sir pl clear gain
13-06-18@12:44:37 (@Mithaldu) please rephrase that, i do not understand
13-06-18@12:45:00 (mib_s4c1yb) now copy the fasta input file to the same place you saved the .pl file at
13-06-18@12:45:33 (@Mithaldu) in what directory did you save the misa.pl file?
13-06-18@12:46:19 (mib_s4c1yb) in c drive
13-06-18@12:46:33 (@Mithaldu) directly in c:\?
13-06-18@12:46:41 (@Mithaldu) not into a directory on your c drive?
13-06-18@12:48:18 (mib_s4c1yb) yes sir putted it in c:\ directly
13-06-18@12:48:22 (@Mithaldu) great
13-06-18@12:48:26 (@Mithaldu) click start
13-06-18@12:48:29 (@Mithaldu) click run
13-06-18@12:48:33 (@Mithaldu) enter cmd
13-06-18@12:48:37 (@Mithaldu) hit the enter key
13-06-18@12:48:47 (@Mithaldu) do you see a black window with some text in it?
13-06-18@12:49:58 (daxim) that window should look like this: https://google.com/search?tbm=isch&q=cmd+window
13-06-18@12:51:01 (mib_s4c1yb) sir it just open and close
13-06-18@12:51:21 (mib_s4c1yb) whats going wrong now sir
13-06-18@12:51:29 (@Mithaldu) exactly what text did you enter into the "run" box?
13-06-18@12:51:46 (@Mithaldu) or maybe better:
13-06-18@12:51:51 (@Mithaldu) exactly what text did you type into the "run" box?
13-06-18@12:53:17 (mib_s4c1yb) saved file putted it in c:\ directly
13-06-18@12:53:45 (@Mithaldu) that was not what i asked
13-06-18@12:53:48 (@Mithaldu) let me try this again
13-06-18@12:53:51 (@Mithaldu) click start
13-06-18@12:53:53 (@Mithaldu) click run
13-06-18@12:54:00 (@Mithaldu) type "cmd"
13-06-18@12:54:03 (mib_s4c1yb) which on
13-06-18@12:54:04 (@Mithaldu) hit enter
13-06-18@12:54:09 (@Mithaldu) try that
13-06-18@12:54:23 (mib_s4c1yb) here is query sir
13-06-18@12:54:39 (@Mithaldu) ask
13-06-18@12:54:56 (@Mithaldu) or do you mean you are seeing the command line shell now?
13-06-18@12:55:01 (mib_s4c1yb) where i have to click for start
13-06-18@12:55:12 (mib_s4c1yb) which file
13-06-18@12:55:16 (@Mithaldu) are you on windows xp?
13-06-18@12:55:29 (mib_s4c1yb) window7
13-06-18@12:55:48 (@Mithaldu) bottom left corner, the windows icon in the circle
13-06-18@12:56:46 (mib_s4c1yb) yes sir
13-06-18@12:56:59 (mib_s4c1yb) what next
13-06-18@12:57:24 (@Mithaldu) do you see a box where it says "Search programs and files"?
13-06-18@12:57:32 (@Mithaldu) if so, type cmd in there and hit enter
13-06-18@12:58:55 (mib_s4c1yb) yes sir
13-06-18@12:59:18 (mib_s4c1yb) cdm.cif.gz available
13-06-18@12:59:32 (@Mithaldu) cmd
13-06-18@12:59:34 (@Mithaldu) not cdm
13-06-18@13:00:26 ¹ºº¹ Join» (bloonix) (~bloonix@dev.bloonix.de)
13-06-18@13:00:34 (mib_s4c1yb) yes sir a new window open
13-06-18@13:00:52 (@Mithaldu) type cd c:\
13-06-18@13:00:54 (@Mithaldu) and hit enter
13-06-18@13:02:23 (mib_s4c1yb) typed it and enter
13-06-18@13:02:39 (@Mithaldu) type dir and hit enter
13-06-18@13:02:48 (@Mithaldu) then look if you see the misa pl script
13-06-18@13:04:19 (mib_s4c1yb) now i am seeing it
13-06-18@13:04:35 (@Mithaldu) now type perl -v
13-06-18@13:04:38 (@Mithaldu) and hit enter
13-06-18@13:04:47 (@Mithaldu) then tell me what you see
13-06-18@13:07:30 (mib_s4c1yb) perl-v is not recognised as internal or external command,operable programme or batch file
13-06-18@13:07:42 (@Mithaldu) did you install strawberry perl?
13-06-18@13:07:52 (mib_s4c1yb) yes sir
13-06-18@13:07:52 (@Mithaldu) if not, do that now
13-06-18@13:08:00 (@Mithaldu) well ...
13-06-18@13:08:05 (@Mithaldu) wait
13-06-18@13:08:08 (@Mithaldu) you type perl-v
13-06-18@13:08:10 (@Mithaldu) i said
13-06-18@13:08:12 (@Mithaldu) perl -v
13-06-18@13:08:16 (@Mithaldu) there's a space inbetween
13-06-18@13:08:42 (@Mithaldu) daxim: if you're up to it, you're gonna have to take over here, we need to go get the lunch we ordered
13-06-18@13:09:29 (daxim) I decline. is someone else here willing to take over?
13-06-18@13:10:00 (@Mithaldu) mib_s4c1yb: download this and read it: http://onyxneon.com/books/modern_perl/modern_perl_a4.pdf
13-06-18@13:10:01 (+dipsy) [ ]
13-06-18@13:10:09 (@Mithaldu) maybe it will help you further while i'm away
13-06-18@13:10:12 ºº¹º Quit» (xlat) (~Nicolas@219.137.229.214) (Remote host closed the connection)
13-06-18@13:10:19 (@Mithaldu) otherwise i'll be back in an hour or two
13-06-18@13:10:37 (mib_s4c1yb) sir its working
13-06-18@13:10:41 (mib_s4c1yb) hello sir
13-06-18@13:10:59 ºº¹¹ Join» (CSJewell) (~CSJewell@189.251.sfcn.org)
13-06-18@13:11:21 (mib_s4c1yb) let me know mail id i want to in touch
13-06-18@13:11:24 ¹ººº Join» (xlat) (~Nicolas@219.137.229.214)
13-06-18@13:11:35 (@Mithaldu) i will be back in an hour or two and i'm always in this channel
13-06-18@13:11:39 (@Mithaldu) so try back later
13-06-18@13:12:00 (mib_s4c1yb) i will wait
13-06-18@13:12:17 (mib_s4c1yb) sir you are from
13-06-18@13:30:43 ¹ººº Quit» (mib_s4c1yb) (75e37158@ircip1.mibbit.com) (Quit: http://www.mibbit.com ajax IRC Client)
13-06-18@13:40:42 ¹¹¹º Join» (mib_iakeov) (75e37158@ircip2.mibbit.com)
13-06-18@13:42:26 (mib_iakeov) hello
13-06-18@13:42:26 (+dipsy) hey, mib_iakeov
13-06-18@13:43:24 (mib_iakeov) pl tell me command for fasta input file into perl
13-06-18@13:46:12 (mib_iakeov) hello
13-06-18@13:51:35 (jamesw) dipsy is a bot
13-06-18@13:56:33 (jamesw) perl misa.pl
13-06-18@13:56:36 (jamesw) tried that?
13-06-18@13:59:06 (mib_iakeov) ok sir
13-06-18@14:01:50 (@Mithaldu) back
13-06-18@14:01:53 (mib_iakeov) when i tried it ,its shows does not exist
13-06-18@14:02:23 (@Mithaldu) can you take a screenshot?
13-06-18@14:02:52 (mib_iakeov) ,its shows fasta file does not exist
13-06-18@14:03:11 (@Mithaldu) aHA
13-06-18@14:03:21 (@Mithaldu) is your fasta file in c:\ ?
13-06-18@14:03:41 (mib_iakeov) no sir
13-06-18@14:03:50 (@Mithaldu) copy it there then
13-06-18@14:04:24 (mib_iakeov) in c drive
13-06-18@14:04:55 (@Mithaldu) copy the fasta file to c:\
13-06-18@14:05:18 (mib_iakeov) ok sir
13-06-18@14:06:26 (mib_iakeov) what next sir
13-06-18@14:07:09 (mib_iakeov) hello sir
13-06-18@14:07:24 (mib_iakeov) what next sir
13-06-18@14:08:40 (@Mithaldu) perl misa.pl fasta_file_name
13-06-18@14:09:13 (mib_iakeov) doing it
13-06-18@14:11:47 (mib_iakeov) it shows fasta file not exist
13-06-18@14:11:52 (mib_iakeov) help me sir
13-06-18@14:12:56 (@Mithaldu) sec
13-06-18@14:13:21 (@Mithaldu) what is the name of the fasta file?
13-06-18@14:13:49 (mib_iakeov) swati6
13-06-18@14:14:30 (@Mithaldu) and you entered
13-06-18@14:14:36 (@Mithaldu) perl misa.pl swati6
13-06-18@14:14:39 (@Mithaldu) correct?
13-06-18@14:14:40 (+dipsy) redact
13-06-18@14:15:33 (mib_iakeov) i had putted perl misa.pl swati6
13-06-18@14:15:46 (@Mithaldu) and swati6 is in c:\
13-06-18@14:15:50 (@Mithaldu) not in a sub directory?
13-06-18@14:16:02 (jamesw) is it swati6 no extension?
13-06-18@14:16:18 (mib_iakeov) it is in a folder in c drive
13-06-18@14:17:09 (@Mithaldu) copy it to c:\
13-06-18@14:17:14 (@Mithaldu) not into a directory
13-06-18@14:17:46 (mib_iakeov) i had putted all fasta files in c drive in a single folder
13-06-18@14:18:18 (@Mithaldu) well you can also copy misa.pl into that folder
13-06-18@14:18:20 (@Mithaldu) and type
13-06-18@14:18:25 (@Mithaldu) cd folder
13-06-18@14:18:37 (@Mithaldu) and then type perl misa.pl fasta_file there
13-06-18@14:20:27 (mib_iakeov) mean to say i have to cut and paste misa.pl file into fasta folder and edit its name as cd folder
13-06-18@14:20:45 (@Mithaldu) no
13-06-18@14:20:49 (mib_iakeov) am i right sir
13-06-18@14:20:57 (@Mithaldu) you copy and paste the misa.pl file into the fasta directory
13-06-18@14:21:04 (@Mithaldu) then go to the black window with the command prompt
13-06-18@14:21:06 (@Mithaldu) and type
13-06-18@14:21:14 (@Mithaldu) cd fasta_directory
13-06-18@14:24:31 (mib_iakeov) sir its shows system can not find the path specified
13-06-18@14:25:26 (mib_iakeov) sir pl resolved it
13-06-18@14:27:24 (@Mithaldu) did you manage to cd into the directory?
13-06-18@14:28:19 (mib_iakeov) i have text editor notepad++
13-06-18@14:28:27 (mib_iakeov) for perl
13-06-18@14:28:30 (@Mithaldu) you did not answer my question
13-06-18@14:28:45 (@Mithaldu) did you manage to cd into the fasta directory?
13-06-18@14:29:04 (mib_iakeov) no sir ,if you guide me i can try
13-06-18@14:29:28 (@Mithaldu) well, what is the full path of the directory on your c drive?
13-06-18@14:31:30 (mib_iakeov) computer>local disk(c:)
13-06-18@14:31:53 (@Mithaldu) i mean the full path of the fasta directory

Please sign in to comment on this gist.

Something went wrong with that request. Please try again.