sbamin

How to GLOBUS CLI

• Download and copy globus_transfer.sh to ~/bin/globus_transfer

dirmode transfer

• Default

• Transfer contents from a single directory

• Target directory (-t) will be created in recursive manner as long as path is writable by an user.

mandiwise

// Reference: http://www.blackdogfoundry.com/blog/moving-repository-from-bitbucket-to-github/
// See also: http://www.paulund.co.uk/change-url-of-git-repository

$ cd $HOME/Code/repo-directory
$ git remote rename origin bitbucket
$ git remote add origin https://github.com/mandiwise/awesome-new-repo.git
$ git push origin master

$ git remote rm bitbucket

myusuf3

To remove a submodule you need to:

• Delete the relevant section from the .gitmodules file.
• Stage the .gitmodules changes git add .gitmodules
• Delete the relevant section from .git/config.
• Run git rm --cached path_to_submodule (no trailing slash).
• Run rm -rf .git/modules/path_to_submodule (no trailing slash).
• Commit git commit -m "Removed submodule "
• Delete the now untracked submodule files rm -rf path_to_submodule

jdblischak

Differential expression analysis with edgeR

This is a tutorial I have presented for the class Genomics and Systems Biology at the University of Chicago. In this course the students learn about study design, normalization, and statistical testing for genomic studies. This is meant to introduce them to how these ideas are implemented in practice. The specific example is a differential expression analysis with edgeR starting with a table of counts and ending with a list of differentially expressed genes.

Past versions:

• Tuesday, April 26, 2016