willgdjones

@app.route('/geneplaza/login', methods=['GET', 'POST'])
@login_required
def geneplaza_login():
    scopes = app.config['DEFAULT_SCOPES']
    redirect_uri = app.BASE_CLIENT_URL + 'geneplaza/auth'
    client_id = app.config['GENEPLAZA_CLIENT_ID']
    submit_url = f"https://www.geneplaza.com/api/auth?response_type=code&client_id={client_id}&redirect_uri={redirect_uri}&scope=dataset"
    return redirect(submit_url)

willgdjones

import numpy as np
import pandas as pd
from datetime import datetime as dt
import pytz
import dash
import dash_core_components as dcc
import dash_html_components as html
import plotly.graph_objs as go
from plotly import tools

willgdjones

import numpy as np
import pandas as pd
from datetime import datetime as dt
import pytz
import dash
import dash_core_components as dcc
import dash_html_components as html
import plotly.graph_objs as go
from plotly import tools

willgdjones

"""Socket test"""

willgdjones

whatR version 3.4.1 (2017-06-30)
Platform: x86_64-pc-linux-gnu (64-bit)
Running under: Ubuntu precise (12.04.5 LTS)

Matrix products: default
BLAS: /usr/lib/atlas-base/libf77blas.so.3gf.0
LAPACK: /usr/lib/atlas-base/atlas/liblapack.so.3gf.0

locale:
 [1] LC_CTYPE=en_GB.UTF-8       LC_NUMERIC=C              

willgdjones

function (package = NULL) 
{
    z <- list()
    z$R.version <- R.Version()
    z$platform <- z$R.version$platform
    if (nzchar(.Platform$r_arch)) 
        z$platform <- paste(z$platform, .Platform$r_arch, sep = "/")
    z$platform <- paste0(z$platform, " (", 8 * .Machine$sizeof.pointer, 
        "-bit)")
    z$locale <- Sys.getlocale()

willgdjones

### Keybase proof

I hereby claim:

  * I am willgdjones on github.
  * I am willgdjones (https://keybase.io/willgdjones) on keybase.
  * I have a public key ASCbDvDv8s1rCDU6-1nNW9MKMAiob6syw-ERaXSLA17_XQo

To claim this, I am signing this object:

willgdjones

./vg construct -r /lustre/scratch113/projects/graphs/yeast/data/SGD_2010.fasta \
-v /lustre/scratch113/projects/graphs/yeast/data/SGRP2-cerevisiae-freebayes-snps-Q30-GQ30.vcf.gz \
-m 1000 -a > output/yeastgraph.vg\

./vg mod -pl 16 -e 3 output/yeastgraph.vg \
| ./vg mod -S -l 32 - \
| ./vg kmers -gB -k 16 -F -H 1000000000 -T 1000000001 - \
> output/yeastgraph.graph /

willgdjones

➜  ybm-vagrant git:(master) ✗ vagrant up app
Bringing machine 'app' up with 'virtualbox' provider...
[app] Importing base box 'grahammc-omnibus-precise64'...
[app] Matching MAC address for NAT networking...
[app] Setting the name of the VM...
[app] Clearing any previously set forwarded ports...
Pruning invalid NFS exports. Administrator privileges will be required...
Password:
[app] Creating shared folders metadata...
[app] Clearing any previously set network interfaces...