gistfile1.txt

whatR version 3.4.1 (2017-06-30)
Platform: x86_64-pc-linux-gnu (64-bit)
Running under: Ubuntu precise (12.04.5 LTS)

Matrix products: default
BLAS: /usr/lib/atlas-base/libf77blas.so.3gf.0
LAPACK: /usr/lib/atlas-base/atlas/liblapack.so.3gf.0

locale:
 [1] LC_CTYPE=en_GB.UTF-8       LC_NUMERIC=C              
 [3] LC_TIME=en_GB.UTF-8        LC_COLLATE=en_GB.UTF-8    
 [5] LC_MONETARY=en_GB.UTF-8    LC_MESSAGES=en_GB.UTF-8   
 [7] LC_PAPER=en_GB.UTF-8       LC_NAME=C                 
 [9] LC_ADDRESS=C               LC_TELEPHONE=C            
[11] LC_MEASUREMENT=en_GB.UTF-8 LC_IDENTIFICATION=C       

attached base packages:
[1] stats4    parallel  stats     graphics  grDevices utils     datasets 
[8] methods   base     

other attached packages:
 [1] DESeq_1.29.0                lattice_0.20-35            
 [3] locfit_1.5-9.1              scater_1.5.11              
 [5] SingleCellExperiment_0.99.3 SummarizedExperiment_1.7.5 
 [7] DelayedArray_0.3.19         matrixStats_0.52.2         
 [9] GenomicRanges_1.29.12       GenomeInfoDb_1.13.4        
[11] IRanges_2.11.12             S4Vectors_0.15.6           
[13] ggplot2_2.2.1               Biobase_2.37.2             
[15] BiocGenerics_0.23.0         BiocInstaller_1.27.3       

loaded via a namespace (and not attached):
 [1] viridis_0.4.0           edgeR_3.19.3            splines_3.4.1          
 [4] bit64_0.9-7             jsonlite_1.5            viridisLite_0.2.0      
 [7] shiny_1.0.5             assertthat_0.2.0        blob_1.1.0             
[10] vipor_0.4.5             GenomeInfoDbData_0.99.1 progress_1.1.2         
[13] RSQLite_2.0             glue_1.1.1              limma_3.33.7           
[16] uuid_0.1-2              digest_0.6.12           RColorBrewer_1.1-2     
[19] XVector_0.17.1          colorspace_1.3-2        htmltools_0.3.6        
[22] httpuv_1.3.5            Matrix_1.2-11           plyr_1.8.4             
[25] XML_3.98-1.9            pkgconfig_2.0.1         biomaRt_2.33.4         
[28] genefilter_1.59.0       zlibbioc_1.23.0         xtable_1.8-2           
[31] scales_0.5.0            annotate_1.55.0         tibble_1.3.4           
[34] repr_0.12.0             lazyeval_0.2.0          survival_2.41-3        
[37] magrittr_1.5            crayon_1.3.2            mime_0.5               
[40] memoise_1.1.0           evaluate_0.10.1         beeswarm_0.2.3         
[43] shinydashboard_0.6.1    tools_3.4.1             data.table_1.10.4      
[46] prettyunits_1.0.2       stringr_1.2.0           munsell_0.4.3          
[49] AnnotationDbi_1.39.2    bindrcpp_0.2            compiler_3.4.1         
[52] rlang_0.1.2             rhdf5_2.21.4            grid_3.4.1             
[55] RCurl_1.95-4.8          tximport_1.5.0          pbdZMQ_0.2-6           
[58] IRkernel_0.8.8.9000     rjson_0.2.15            bitops_1.0-6           
[61] gtable_0.2.0            DBI_0.7                 reshape2_1.4.2         
[64] R6_2.2.2                gridExtra_2.2.1         dplyr_0.7.2            
[67] bit_1.1-12              bindr_0.1               stringi_1.1.5          
[70] ggbeeswarm_0.6.0        IRdisplay_0.4.4         Rcpp_0.12.12           
[73] geneplotter_1.55.0