Created
March 26, 2019 10:42
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nextflow conda bug
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| params.in = "$baseDir/reads.fa" | |
| sequences = file(params.in) | |
| process test { | |
| conda 'transabyss' | |
| input: | |
| file 'input.fa' from sequences | |
| output: | |
| file 'transcripts.fa' into results | |
| """ | |
| transabyss --single input.fa\ | |
| --outdir ./tabyss\ | |
| --length 100\ | |
| --threads 2 | |
| """ | |
| } | |
| results.subscribe { println it } |
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| >0/1 | |
| TAAAAAT | |
| >1/1 | |
| AAAATA | |
| >2/1 | |
| GAAAAAC | |
| >3/1 | |
| AAAACA | |
| >4/1 | |
| TAAAAAT | |
| >5/1 | |
| AAAATA | |
| >6/1 | |
| GAAAAAC | |
| >7/1 | |
| AAAACA | |
| >8/1 | |
| TAAAAAT | |
| >9/1 | |
| AAAATA | |
| >10/1 | |
| GAAAAAC | |
| >11/1 | |
| AAAACA | |
| >12/1 | |
| TAAAAAT | |
| >13/1 | |
| AAAATA | |
| >14/1 | |
| GAAAAAC | |
| >15/1 | |
| AAAACA |
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