shell script for creating SLURM job array for given EBTEL parameters

job_array.slurm

#!/usr/bin/bash

### SLURM Parameters
#SBATCH --partition=commons
#SBATCH --nodes=1
#SBATCH --ntasks=1
#SBATCH --job-name=emc_single_a2.5_L120.0
#SBATCH --time=00:01:30

### EBTEL Configuration options
alpha=2.5
loopLength=120.0
species=single
tpulse=100.0
solver=rka4

### Setup path to script and root config paths
script="$HOME/EBTEL_C/bin/ebtel quiet "
s1="$SHARED_SCRATCH/wtb2/EBTEL_C_runs/${species}_heating_runs/alpha${alpha}/config/"
s2="ebtel_L${loopLength}_tn"
s3="_tpulse${tpulse}_${solver}"

###Load file with all possible configurations
job_array=(`cat $s1"ebtel_L${loopLength}"$s3"_job_array.conf"`)

### Submit job
srun $script$s1$s2${job_array[$((2*$SLURM_ARRAY_TASK_ID))]}$s3"/"$s2${job_array[$((2*$SLURM_ARRAY_TASK_ID))]}$s3"_"${job_array[$((2*$SLURM_ARRAY_TASK_ID+1))]}".xml"