Will Barnes wtbarnes

## kill-processes.py
import subprocess
import click

@click.command()
@click.option('--filters', type=str, default=[], multiple=True)
@click.option('--dry-run', is_flag=True, default=False, help='If set, do not kill anything.')
def cli(filters, dry_run):
    cmd = 'ps aux'
    for f in filters:
        cmd += f' | grep {f}'

## glue-config.py
"""
Glue environment customization
"""
from glue.config import data_exporter

from astropy.coordinates import SkyCoord
import sunpy.coordinates  # This registers the needed coordinate frames
import asdf


## the-astrophysical-journal-numbered.csl
<?xml version="1.0" encoding="utf-8"?>
<style xmlns="http://purl.org/net/xbiblio/csl" class="in-text" version="1.0" demote-non-dropping-particle="sort-only" default-locale="en-GB">
  <info>
    <title>The Astrophysical Journal (numbered)</title>
    <id>http://www.zotero.org/styles/the-astrophysical-journal-numbered</id>
    <link href="http://www.zotero.org/styles/the-astrophysical-journal" rel="self"/>
    <link href="http://www.zotero.org/styles/nature" rel="template"/>
    <link href="http://aas.org/journals/authors/common_instruct#references" rel="documentation"/>
    <author>
      <name>Chris Lowder</name>

## aia-cube.py
"""
Utilities for working with aligned AIA data cubes
"""
import copy
from os import uname
import warnings

import astropy.time
import astropy.wcs
import astropy.units as u

## prep_pipeline.py
"""
Process images from level 1 FITS to level 1.5 aligned cutouts in Zarr
"""
import copy
import glob
import logging
import os
import traceback

import sunpy

## tai-time-tests.ipynb

      
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                wtbarnes
                / tai-time-tests.ipynb
            
            
              Created
              August 18, 2021 16:39
            
              
                Differences between astropy time and anytim2tai
              
          
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## hk12-sunkit-dem.py
"""
Hannah-Kontar (2012) DEM model definition
"""
import sys

import numpy as np
import astropy.units as u
from sunkit_dem import GenericModel

# Clone this repo and replace path below: https://github.com/ianan/demreg

## extrapolators.py
"""
Field extrapolation methods for computing 3D vector magnetic fields from LOS magnetograms
"""
import numpy as np
from scipy.interpolate import griddata
import astropy.units as u
import numba
from astropy.utils.console import ProgressBar

from synthesizAR.util import SpatialPair

## mgn-rgb-example.py
"""
Create a composite RGB image using MGN-processed images from SDO/AIA 211, 193, and 171
"""
import astropy.units as u
from astropy.coordinates import SkyCoord
from astropy.visualization import make_lupton_rgb,ImageNormalize
import numpy as np
import matplotlib.pyplot as plt
from sunpy.net import Fido, attrs as a
from sunpy.map import Map

## synthesizar-demo.ipynb

      
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                wtbarnes
                / synthesizar-demo.ipynb
            
            
              Last active
              June 25, 2021 15:33
            
              
                Demo of forward modeling optically-thin coronal emission using the synthesizAR package
              
          
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	import subprocess
	import click

	@click.command()
	@click.option('--filters', type=str, default=[], multiple=True)
	@click.option('--dry-run', is_flag=True, default=False, help='If set, do not kill anything.')
	def cli(filters, dry_run):
	cmd = 'ps aux'
	for f in filters:
	cmd += f' \| grep {f}'
	"""
	Glue environment customization
	"""
	from glue.config import data_exporter

	from astropy.coordinates import SkyCoord
	import sunpy.coordinates # This registers the needed coordinate frames
	import asdf
	<?xml version="1.0" encoding="utf-8"?>
	<style xmlns="http://purl.org/net/xbiblio/csl" class="in-text" version="1.0" demote-non-dropping-particle="sort-only" default-locale="en-GB">
	<info>
	<title>The Astrophysical Journal (numbered)</title>
	<id>http://www.zotero.org/styles/the-astrophysical-journal-numbered</id>
	<link href="http://www.zotero.org/styles/the-astrophysical-journal" rel="self"/>
	<link href="http://www.zotero.org/styles/nature" rel="template"/>
	<link href="http://aas.org/journals/authors/common_instruct#references" rel="documentation"/>
	<author>
	<name>Chris Lowder</name>
	"""
	Utilities for working with aligned AIA data cubes
	"""
	import copy
	from os import uname
	import warnings

	import astropy.time
	import astropy.wcs
	import astropy.units as u
	"""
	Process images from level 1 FITS to level 1.5 aligned cutouts in Zarr
	"""
	import copy
	import glob
	import logging
	import os
	import traceback

	import sunpy
	"""
	Hannah-Kontar (2012) DEM model definition
	"""
	import sys

	import numpy as np
	import astropy.units as u
	from sunkit_dem import GenericModel

	# Clone this repo and replace path below: https://github.com/ianan/demreg
	"""
	Field extrapolation methods for computing 3D vector magnetic fields from LOS magnetograms
	"""
	import numpy as np
	from scipy.interpolate import griddata
	import astropy.units as u
	import numba
	from astropy.utils.console import ProgressBar

	from synthesizAR.util import SpatialPair
	"""
	Create a composite RGB image using MGN-processed images from SDO/AIA 211, 193, and 171
	"""
	import astropy.units as u
	from astropy.coordinates import SkyCoord
	from astropy.visualization import make_lupton_rgb,ImageNormalize
	import numpy as np
	import matplotlib.pyplot as plt
	from sunpy.net import Fido, attrs as a
	from sunpy.map import Map