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June 24, 2014 18:07
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| | Loading Grails 2.2.5 | |
| | Configuring classpath | |
| Cannot find plugin descriptor for path '/home/gus/src/OLF_upstream/prototype'. | |
| Cannot find plugin descriptor for path '/home/gus/src/OLF_upstream/modules/OpenLabBackend'. | |
| Cannot find plugin descriptor for path '/home/gus/src/OLF_upstream/modules/OpenLabBarcode'. | |
| Cannot find plugin descriptor for path '/home/gus/src/OLF_upstream/modules/OpenLabAttachments'. | |
| Cannot find plugin descriptor for path '/home/gus/src/OLF_upstream/modules/OpenLabStorage'. | |
| Cannot find plugin descriptor for path '/home/gus/src/OLF_upstream/modules/OpenLabGeneTracker'. | |
| Cannot find plugin descriptor for path '/home/gus/src/OLF_upstream/modules/OpenLabNotes'. | |
| | Configuring classpath. | |
| | Environment set to development | |
| | Environment set to development. | |
| | Environment set to development.. | |
| | Environment set to development... | |
| | Environment set to development.... | |
| | Environment set to development..... | |
| | Packaging Grails application | |
| | Packaging Grails application. | |
| | Packaging Grails application.. | |
| | Packaging Grails application... | |
| | Packaging Grails application.... | |
| | Compiling 59 source files | |
| | Compiling 59 source files. | |
| | Error Compilation error: startup failed: | |
| /home/gus/src/OLF_upstream/grails-app/conf/BootStrap.groovy: 38: unable to resolve class org.openlab.security.User | |
| @ line 38, column 1. | |
| import org.openlab.security.User | |
| ^ | |
| /home/gus/src/OLF_upstream/grails-app/conf/BootStrap.groovy: 45: unable to resolve class org.openlab.genetracker.Gene | |
| @ line 45, column 1. | |
| import org.openlab.genetracker.Gene | |
| ^ | |
| /home/gus/src/OLF_upstream/grails-app/conf/BootStrap.groovy: 33: unable to resolve class org.openlab.barcode.BarcodeSite | |
| @ line 33, column 1. | |
| import org.openlab.barcode.BarcodeSite | |
| ^ | |
| /home/gus/src/OLF_upstream/grails-app/conf/BootStrap.groovy: 31: unable to resolve class org.openlab.barcode.BarcodeDataObject | |
| @ line 31, column 1. | |
| import org.openlab.barcode.BarcodeDataObject | |
| ^ | |
| /home/gus/src/OLF_upstream/grails-app/conf/BootStrap.groovy: 34: unable to resolve class org.openlab.main.Laboratory | |
| @ line 34, column 1. | |
| import org.openlab.main.Laboratory | |
| ^ | |
| /home/gus/src/OLF_upstream/grails-app/conf/BootStrap.groovy: 40: unable to resolve class org.openlab.storage.Box | |
| @ line 40, column 1. | |
| import org.openlab.storage.Box | |
| ^ | |
| /home/gus/src/OLF_upstream/grails-app/conf/BootStrap.groovy: 44: unable to resolve class org.openlab.genetracker.Recombinant | |
| @ line 44, column 1. | |
| import org.openlab.genetracker.Recombinant | |
| ^ | |
| /home/gus/src/OLF_upstream/grails-app/conf/BootStrap.groovy: 41: unable to resolve class org.openlab.storage.Compartment | |
| @ line 41, column 1. | |
| import org.openlab.storage.Compartment | |
| ^ | |
| /home/gus/src/OLF_upstream/grails-app/conf/BootStrap.groovy: 36: unable to resolve class org.openlab.security.Requestmap | |
| @ line 36, column 1. | |
| import org.openlab.security.Requestmap | |
| ^ | |
| /home/gus/src/OLF_upstream/grails-app/conf/BootStrap.groovy: 32: unable to resolve class org.openlab.barcode.BarcodeLabel | |
| @ line 32, column 1. | |
| import org.openlab.barcode.BarcodeLabel | |
| ^ | |
| /home/gus/src/OLF_upstream/grails-app/conf/BootStrap.groovy: 39: unable to resolve class org.openlab.security.UserRole | |
| @ line 39, column 1. | |
| import org.openlab.security.UserRole | |
| ^ | |
| /home/gus/src/OLF_upstream/grails-app/conf/BootStrap.groovy: 37: unable to resolve class org.openlab.security.Role | |
| @ line 37, column 1. | |
| import org.openlab.security.Role | |
| ^ | |
| /home/gus/src/OLF_upstream/grails-app/conf/BootStrap.groovy: 43: unable to resolve class org.openlab.storage.StorageLocation | |
| @ line 43, column 1. | |
| import org.openlab.storage.StorageLocation | |
| ^ | |
| /home/gus/src/OLF_upstream/grails-app/conf/BootStrap.groovy: 35: unable to resolve class org.openlab.main.Project | |
| @ line 35, column 1. | |
| import org.openlab.main.Project | |
| ^ | |
| /home/gus/src/OLF_upstream/grails-app/conf/BootStrap.groovy: 42: unable to resolve class org.openlab.storage.Freezer | |
| @ line 42, column 1. | |
| import org.openlab.storage.Freezer | |
| ^ | |
| /home/gus/src/OLF_upstream/src/groovy/org/openlab/dataimport/creator/GeneCreator.groovy: 103: unable to resolve class Project | |
| @ line 103, column 18. | |
| project = new Project(laboratory: Laboratory.findByName("Heidelberg"), name:"import", description:"import project for unassigned genes.").save(flush:true) | |
| ^ | |
| /home/gus/src/OLF_upstream/src/groovy/org/openlab/dataimport/creator/GeneCreator.groovy: 143: unable to resolve class Gene | |
| @ line 143, column 20. | |
| def newGene = new Gene(gene) | |
| ^ | |
| /home/gus/src/OLF_upstream/src/groovy/org/openlab/dataimport/creator/MasterDataCreator.groovy: 60: unable to resolve class CellLine | |
| @ line 60, column 21. | |
| def cellLine = new CellLine(it).save() | |
| ^ | |
| /home/gus/src/OLF_upstream/src/groovy/org/openlab/dataimport/creator/MasterDataCreator.groovy: 75: unable to resolve class Origin | |
| @ line 75, column 17. | |
| def origin1 = new Origin(label: "cDNA", description: "cDNA") | |
| ^ | |
| /home/gus/src/OLF_upstream/src/groovy/org/openlab/dataimport/creator/MasterDataCreator.groovy: 78: unable to resolve class Origin | |
| @ line 78, column 17. | |
| def origin2 = new Origin(label: "Cell-Line", description: "Cell-Line") | |
| ^ | |
| /home/gus/src/OLF_upstream/src/groovy/org/openlab/dataimport/creator/MasterDataCreator.groovy: 81: unable to resolve class Origin | |
| @ line 81, column 17. | |
| def origin3 = new Origin(label: "Library Clone", description : "Library Clone") | |
| ^ | |
| /home/gus/src/OLF_upstream/src/groovy/org/openlab/dataimport/creator/MasterDataCreator.groovy: 84: unable to resolve class Antibiotics | |
| @ line 84, column 20. | |
| def ampicillin = new Antibiotics(label: 'Ampicillin') | |
| ^ | |
| /home/gus/src/OLF_upstream/src/groovy/org/openlab/dataimport/creator/MasterDataCreator.groovy: 87: unable to resolve class Antibiotics | |
| @ line 87, column 20. | |
| def penicillin = new Antibiotics(label: 'Penicillin') | |
| ^ | |
| /home/gus/src/OLF_upstream/src/groovy/org/openlab/dataimport/creator/MasterDataCreator.groovy: 90: unable to resolve class Antibiotics | |
| @ line 90, column 20. | |
| def vancomycin = new Antibiotics(label: 'Vancomycin') | |
| ^ | |
| /home/gus/src/OLF_upstream/src/groovy/org/openlab/dataimport/creator/MasterDataCreator.groovy: 93: unable to resolve class Antibiotics | |
| @ line 93, column 19. | |
| def kanamycin = new Antibiotics(label: 'Kanamycin') | |
| ^ | |
| /home/gus/src/OLF_upstream/src/groovy/org/openlab/dataimport/creator/MasterDataCreator.groovy: 96: unable to resolve class CultureMedia | |
| @ line 96, column 14. | |
| def dmem = new CultureMedia(label: 'DMEM') | |
| ^ | |
| /home/gus/src/OLF_upstream/src/groovy/org/openlab/dataimport/creator/MasterDataCreator.groovy: 99: unable to resolve class CultureMedia | |
| @ line 99, column 14. | |
| def f12k = new CultureMedia(label: 'F12K') | |
| ^ | |
| /home/gus/src/OLF_upstream/src/groovy/org/openlab/dataimport/creator/MasterDataCreator.groovy: 102: unable to resolve class CultureMedia | |
| @ line 102, column 14. | |
| def rpmi = new CultureMedia(label: 'RPMI') | |
| ^ | |
| /home/gus/src/OLF_upstream/src/groovy/org/openlab/dataimport/creator/MasterDataCreator.groovy: 105: unable to resolve class MediumAdditive | |
| @ line 105, column 16. | |
| def hydroc = new MediumAdditive(label: 'Hydrocortisone', description: '') | |
| ^ | |
| /home/gus/src/OLF_upstream/src/groovy/org/openlab/dataimport/creator/MasterDataCreator.groovy: 108: unable to resolve class MediumAdditive | |
| @ line 108, column 17. | |
| def insulin = new MediumAdditive(label: 'Insulin', description: '') | |
| ^ | |
| /home/gus/src/OLF_upstream/src/groovy/org/openlab/dataimport/creator/MasterDataCreator.groovy: 111: unable to resolve class MediumAdditive | |
| @ line 111, column 13. | |
| def fks = new MediumAdditive(label: '5% FKS', description: '') | |
| ^ | |
| /home/gus/src/OLF_upstream/src/groovy/org/openlab/dataimport/creator/MasterDataCreator.groovy: 114: unable to resolve class MediumAdditive | |
| @ line 114, column 15. | |
| def fks10 = new MediumAdditive(label: '10% FKS', description: '') | |
| ^ | |
| /home/gus/src/OLF_upstream/src/groovy/org/openlab/dataimport/creator/MasterDataCreator.groovy: 117: unable to resolve class CellLine | |
| @ line 117, column 13. | |
| def ags = new CellLine(notes: '', label: 'AGS', antibiotics: [penicillin, vancomycin], cultureMedia: f12k, goodies: [hydroc, fks]) | |
| ^ | |
| /home/gus/src/OLF_upstream/src/groovy/org/openlab/dataimport/creator/MasterDataCreator.groovy: 120: unable to resolve class CellLine | |
| @ line 120, column 14. | |
| def a375 = new CellLine(notes: '', label: 'A375', antibiotics: [], cultureMedia: rpmi, goodies: [fks10]) | |
| ^ | |
| /home/gus/src/OLF_upstream/src/groovy/org/openlab/dataimport/creator/MasterDataCreator.groovy: 123: unable to resolve class CellLine | |
| @ line 123, column 15. | |
| def skmel = new CellLine(notes: '', label: 'SK-MEL-28', antibiotics: [], cultureMedia: dmem, goodies: [fks10]) | |
| ^ | |
| /home/gus/src/OLF_upstream/src/groovy/org/openlab/dataimport/creator/MasterDataCreator.groovy: 131: unable to resolve class Acceptor | |
| @ line 131, column 17. | |
| def vector1 = new Acceptor(label: "pPAR3", description: "", type: "Acceptor") | |
| ^ | |
| /home/gus/src/OLF_upstream/src/groovy/org/openlab/dataimport/creator/MasterDataCreator.groovy: 134: unable to resolve class IntegrationFirst | |
| @ line 134, column 17. | |
| def vector2 = new IntegrationFirst(label: "pDONR221", description: "", type: "Cloning Vector") | |
| ^ | |
| /home/gus/src/OLF_upstream/src/groovy/org/openlab/dataimport/creator/MasterDataCreator.groovy: 137: unable to resolve class IntegrationFirst | |
| @ line 137, column 17. | |
| def vector3 = new IntegrationFirst(label: "pDONR201", description: "", type: "Cloning Vector") | |
| ^ | |
| /home/gus/src/OLF_upstream/src/groovy/org/openlab/dataimport/creator/MasterDataCreator.groovy: 140: unable to resolve class IntegrationFirst | |
| @ line 140, column 17. | |
| def vector4 = new IntegrationFirst(label: "pDONR223", description: "", type: "Cloning Vector") | |
| ^ | |
| /home/gus/src/OLF_upstream/src/groovy/org/openlab/dataimport/creator/MasterDataCreator.groovy: 143: unable to resolve class IntegrationFirst | |
| @ line 143, column 17. | |
| def vector5 = new IntegrationFirst(label: "duplicates", description: "import combines with gene with that vector if combination already existed.", type: "Cloning Vector") | |
| ^ | |
| /home/gus/src/OLF_upstream/src/groovy/org/openlab/dataimport/creator/MasterDataCreator.groovy: 146: unable to resolve class CloningVector | |
| @ line 146, column 17. | |
| def vector6 = new CloningVector(label: "pDEST-1", description: "", type: "Integration (First)") | |
| ^ | |
| /home/gus/src/OLF_upstream/src/groovy/org/openlab/dataimport/creator/MasterDataCreator.groovy: 149: unable to resolve class CloningVector | |
| @ line 149, column 17. | |
| def vector7 = new CloningVector(label: "pDEST-2", description: "", type: "Integration (First)") | |
| ^ | |
| /home/gus/src/OLF_upstream/src/groovy/org/openlab/dataimport/creator/MasterDataCreator.groovy: 182: unable to resolve class Organism | |
| @ line 182, column 19. | |
| def organism = new Organism(name: it, label: commonOrganisms[it], description: "") | |
| ^ | |
| /home/gus/src/OLF_upstream/src/groovy/org/openlab/dataimport/creator/MasterDataCreator.groovy: 189: unable to resolve class Laboratory | |
| @ line 189, column 3. | |
| new Laboratory(name: "Odense", description: "NanoCAN").save() | |
| ^ | |
| /home/gus/src/OLF_upstream/src/groovy/org/openlab/dataimport/creator/MasterDataCreator.groovy: 190: unable to resolve class Laboratory | |
| @ line 190, column 3. | |
| new Laboratory(name: "Heidelberg", description: "DKFZ").save() | |
| ^ | |
| /home/gus/src/OLF_upstream/src/groovy/org/openlab/dataimport/creator/RecombinantCreator.groovy: 107: unable to resolve class Recombinant | |
| @ line 107, column 24. | |
| def recombinant = new Recombinant(strain).save(flush:true) | |
| ^ | |
| /home/gus/src/OLF_upstream/src/groovy/org/openlab/dataimport/creator/RecombinantCreator.groovy: 113: unable to resolve class Recombinant | |
| @ line 113, column 21. | |
| recombinant = new Recombinant(strain).save(flush:true) | |
| ^ | |
| /home/gus/src/OLF_upstream/src/groovy/org/openlab/dataimport/creator/RecombinantCreator.groovy: 169: unable to resolve class Recombinant | |
| @ line 169, column 21. | |
| recombinant = new Recombinant(notes:'', creator: gene.creator, genes: [gene], vector: vector).save() | |
| ^ | |
| /home/gus/src/OLF_upstream/src/groovy/org/openlab/dataimport/creator/StorageCreator.groovy: 65: unable to resolve class Freezer | |
| @ line 65, column 23. | |
| importFreezer = new Freezer(description:"import", temp: "0", | |
| ^ | |
| /home/gus/src/OLF_upstream/src/groovy/org/openlab/dataimport/creator/StorageCreator.groovy: 66: unable to resolve class StorageLocation | |
| @ line 66, column 18. | |
| location: new StorageLocation(description: "import").save()).save() | |
| ^ | |
| /home/gus/src/OLF_upstream/src/groovy/org/openlab/dataimport/creator/StorageCreator.groovy: 74: unable to resolve class Compartment | |
| @ line 74, column 25. | |
| def newCompartment = new Compartment(comp) | |
| ^ | |
| /home/gus/src/OLF_upstream/src/groovy/org/openlab/dataimport/creator/StorageCreator.groovy: 93: unable to resolve class StorageLocation | |
| @ line 93, column 18. | |
| def location = new StorageLocation(description: "WP25", room: 47).save() | |
| ^ | |
| /home/gus/src/OLF_upstream/src/groovy/org/openlab/dataimport/creator/StorageCreator.groovy: 94: unable to resolve class Compartment | |
| @ line 94, column 21. | |
| def compartment = new Compartment(description: "Freezer(-80)") | |
| ^ | |
| /home/gus/src/OLF_upstream/src/groovy/org/openlab/dataimport/creator/StorageCreator.groovy: 95: unable to resolve class Box | |
| @ line 95, column 13. | |
| def box = new Box(xdim: 8, ydim: 12, description: "Gateway-1") | |
| ^ | |
| /home/gus/src/OLF_upstream/src/groovy/org/openlab/dataimport/creator/StorageCreator.groovy: 96: unable to resolve class Freezer | |
| @ line 96, column 3. | |
| new Freezer(temperature: -80, location: location, description: "Odense") | |
| ^ | |
| /home/gus/src/OLF_upstream/src/groovy/org/openlab/dataimport/creator/StorageCreator.groovy: 106: unable to resolve class Compartment | |
| @ line 106, column 17. | |
| compartment = new Compartment(description: "2.325 (-80)") | |
| ^ | |
| /home/gus/src/OLF_upstream/src/groovy/org/openlab/dataimport/creator/StorageCreator.groovy: 107: unable to resolve class StorageLocation | |
| @ line 107, column 14. | |
| location = new StorageLocation(description: "Heidelberg", room: 2325).save() | |
| ^ | |
| /home/gus/src/OLF_upstream/src/groovy/org/openlab/dataimport/creator/StorageCreator.groovy: 108: unable to resolve class Freezer | |
| @ line 108, column 3. | |
| new Freezer(temperature: -80, location: location, description: "Heidelberg -80") | |
| ^ | |
| /home/gus/src/OLF_upstream/src/groovy/org/openlab/dataimport/creator/StorageCreator.groovy: 112: unable to resolve class Box | |
| @ line 112, column 27. | |
| compartment.addToBoxes(new Box(xdim: xdim, ydim: ydim, description: "Rainer${i}")).save() | |
| ^ | |
| /home/gus/src/OLF_upstream/src/groovy/org/openlab/dataimport/creator/StorageCreator.groovy: 114: unable to resolve class Box | |
| @ line 114, column 26. | |
| compartment.addToBoxes(new Box(xdim: xdim, ydim: ydim, description: "Paul")).save() | |
| ^ | |
| /home/gus/src/OLF_upstream/src/groovy/org/openlab/dataimport/creator/StorageCreator.groovy: 116: unable to resolve class Box | |
| @ line 116, column 26. | |
| compartment.addToBoxes(new Box(xdim: xdim, ydim: ydim, description: "RZPD strain plate")).save() | |
| ^ | |
| /home/gus/src/OLF_upstream/src/groovy/org/openlab/dataimport/creator/StorageCreator.groovy: 118: unable to resolve class Box | |
| @ line 118, column 26. | |
| compartment.addToBoxes(new Box(xdim: xdim, ydim: ydim, description: "MGC_Klone")).save() | |
| ^ | |
| /home/gus/src/OLF_upstream/src/groovy/org/openlab/dataimport/creator/StorageCreator.groovy: 121: unable to resolve class Compartment | |
| @ line 121, column 16. | |
| compartment= new Compartment(description: "2.312 (Stephi)") | |
| ^ | |
| /home/gus/src/OLF_upstream/src/groovy/org/openlab/dataimport/creator/StorageCreator.groovy: 122: unable to resolve class StorageLocation | |
| @ line 122, column 14. | |
| location = new StorageLocation(description: "Heidelberg", room: 2312).save() | |
| ^ | |
| /home/gus/src/OLF_upstream/src/groovy/org/openlab/dataimport/creator/StorageCreator.groovy: 123: unable to resolve class Freezer | |
| @ line 123, column 3. | |
| new Freezer(temperature: 0, location: location, description: "Heidelberg (Stephi)") | |
| ^ | |
| /home/gus/src/OLF_upstream/src/groovy/org/openlab/dataimport/creator/StorageCreator.groovy: 127: unable to resolve class Box | |
| @ line 127, column 27. | |
| compartment.addToBoxes(new Box(xdim: xdim, ydim: ydim, description: "DNA")).save() | |
| ^ | |
| /home/gus/src/OLF_upstream/src/groovy/org/openlab/dataimport/creator/StorageCreator.groovy: 130: unable to resolve class Compartment | |
| @ line 130, column 17. | |
| compartment = new Compartment(description: "2325 (-20)") | |
| ^ | |
| /home/gus/src/OLF_upstream/src/groovy/org/openlab/dataimport/creator/StorageCreator.groovy: 131: unable to resolve class StorageLocation | |
| @ line 131, column 14. | |
| location = new StorageLocation(description: "Heidelberg", room: 2325).save() | |
| ^ | |
| /home/gus/src/OLF_upstream/src/groovy/org/openlab/dataimport/creator/StorageCreator.groovy: 132: unable to resolve class Freezer | |
| @ line 132, column 3. | |
| new Freezer(temperature: -20, location: location, description: "Heidelberg -20") | |
| ^ | |
| /home/gus/src/OLF_upstream/src/groovy/org/openlab/dataimport/creator/StorageCreator.groovy: 136: unable to resolve class Box | |
| @ line 136, column 27. | |
| compartment.addToBoxes(new Box(xdim: xdim, ydim: ydim, description: "Primer")).save() | |
| ^ | |
| /home/gus/src/OLF_upstream/src/groovy/org/openlab/dataimport/creator/StorageCreator.groovy: 146: unable to resolve class StorageLocation | |
| @ line 146, column 23. | |
| freezer.location = new StorageLocation(description: (freezer.oldLocation?:freezer.description)?:freezer.oldId).save() | |
| ^ | |
| /home/gus/src/OLF_upstream/src/groovy/org/openlab/dataimport/creator/StorageCreator.groovy: 148: unable to resolve class Freezer | |
| @ line 148, column 21. | |
| def newFreezer = new Freezer(freezer).save() | |
| ^ | |
| /home/gus/src/OLF_upstream/src/groovy/org/openlab/dataimport/processor/CellLineDataProcessor.groovy: 42: unable to resolve class org.openlab.main.DataObject | |
| @ line 42, column 1. | |
| import org.openlab.main.DataObject; | |
| ^ | |
| /home/gus/src/OLF_upstream/src/groovy/org/openlab/dataimport/processor/CellLineDataProcessor.groovy: 84: unable to resolve class Recombinant | |
| @ line 84, column 21. | |
| recombinant = new Recombinant(notes:'', creator: gene.creator, genes: [gene], vector: vector).save() | |
| ^ | |
| /home/gus/src/OLF_upstream/src/groovy/org/openlab/dataimport/processor/CellLineDataProcessor.groovy: 107: unable to resolve class CellLineData | |
| @ line 107, column 25. | |
| def cellLineData = new CellLineData(entryClone).save() | |
| ^ | |
| /home/gus/src/OLF_upstream/src/groovy/org/openlab/dataimport/processor/ProjectsProcessor.groovy: 73: unable to resolve class Project | |
| @ line 73, column 31. | |
| laboratory.addToProjects(new Project(project)).save(flush:true) | |
| ^ | |
| /home/gus/src/OLF_upstream/src/groovy/org/openlab/dataimport/processor/StorageProcessor.groovy: 42: unable to resolve class org.openlab.main.DataObject | |
| @ line 42, column 1. | |
| import org.openlab.main.DataObject; | |
| ^ | |
| /home/gus/src/OLF_upstream/src/groovy/org/openlab/dataimport/processor/StorageProcessor.groovy: 155: unable to resolve class Box | |
| @ line 155, column 20. | |
| def newBox = new Box(description: (box.description+"-"+counter), xdim: 8, ydim: 12) | |
| ^ | |
| /home/gus/src/OLF_upstream/src/groovy/org/openlab/dataimport/processor/StorageProcessor.groovy: 181: unable to resolve class StorageElement | |
| @ line 181, column 20. | |
| def newElement = new StorageElement(description: "", xcoord: boxCreationService.getIntFromAlpha(storage.oldX.trim().charAt(0))-1, | |
| ^ | |
| /home/gus/src/OLF_upstream/src/groovy/org/openlab/dataimport/processor/StorageProcessor.groovy: 238: unable to resolve class Compartment | |
| @ line 238, column 19. | |
| compartment = new Compartment(description: "import") | |
| ^ | |
| /home/gus/src/OLF_upstream/src/groovy/org/openlab/dataimport/processor/StorageProcessor.groovy: 254: unable to resolve class Box | |
| @ line 254, column 16. | |
| def newBox = new Box(xdim: 1, ydim: 20, description: "Odense-1", compartment: | |
| ^ | |
| /home/gus/src/OLF_upstream/src/groovy/org/openlab/dataimport/processor/StorageProcessor.groovy: 262: unable to resolve class StorageElement | |
| @ line 262, column 21. | |
| box.addToElements(new StorageElement(description: "", xcoord: boxCreationService.getIntFromAlpha(storage.oldX.charAt(0)), | |
| ^ | |
| /home/gus/src/OLF_upstream/src/groovy/org/openlab/dataimport/processor/StorageProcessor.groovy: 281: unable to resolve class Box | |
| @ line 281, column 19. | |
| if(!box) box = new Box(xdim: 8, ydim: 12, description: "import", compartment: compartment).save() | |
| ^ | |
| /home/gus/src/OLF_upstream/src/groovy/org/openlab/dataimport/processor/StorageProcessor.groovy: 288: unable to resolve class Box | |
| @ line 288, column 11. | |
| box = new Box(xdim: 8, ydim: 12, description: storage.boxName.toString().trim(), compartment: compartment).save(flush:true) | |
| ^ | |
| /home/gus/src/OLF_upstream/src/groovy/org/openlab/dataimport/processor/UserDateProcessor.groovy: 67: unable to resolve class User | |
| @ line 67, column 6. | |
| new User(userParams).save() | |
| ^ | |
| /home/gus/src/OLF_upstream/grails-app/module/org/openlab/module/addin/MyAppStatusAddinModule.groovy: 34: unable to resolve class AddinModule | |
| @ line 34, column 1. | |
| class MyAppStatusAddinModule implements AddinModule{ | |
| ^ | |
| /home/gus/src/OLF_upstream/grails-app/module/org/openlab/module/addin/googleAddinModule.groovy: 34: unable to resolve class AddinModule | |
| @ line 34, column 1. | |
| class googleAddinModule implements AddinModule { | |
| ^ | |
| /home/gus/src/OLF_upstream/grails-app/module/org/openlab/module/menu/adminMenuModule.groovy: 36: unable to resolve class MenuModule | |
| @ line 36, column 1. | |
| class adminMenuModule implements MenuModule{ | |
| ^ | |
| /home/gus/src/OLF_upstream/grails-app/module/org/openlab/module/menu/projectMenuModule.groovy: 37: unable to resolve class MenuModule | |
| @ line 37, column 1. | |
| class projectMenuModule implements MenuModule{ | |
| ^ | |
| /home/gus/src/OLF_upstream/grails-app/module/org/openlab/module/menu/settingsMenuModule.groovy: 35: unable to resolve class MenuModule | |
| @ line 35, column 1. | |
| class settingsMenuModule implements MenuModule { | |
| ^ | |
| /home/gus/src/OLF_upstream/grails-app/module/org/openlab/module/tab/ProjectTabModule.groovy: 35: unable to resolve class Module | |
| @ line 35, column 1. | |
| class ProjectTabModule implements Module{ | |
| ^ | |
| /home/gus/src/OLF_upstream/grails-app/controllers/org/openlab/content/MyTabsController.groovy: 32: unable to resolve class org.openlab.module.Module | |
| @ line 32, column 1. | |
| import org.openlab.module.Module | |
| ^ | |
| /home/gus/src/OLF_upstream/grails-app/controllers/org/openlab/navigation/ProjectTreeController.groovy: 34: unable to resolve class org.openlab.genetracker.Gene | |
| @ line 34, column 1. | |
| import org.openlab.genetracker.Gene | |
| ^ | |
| /home/gus/src/OLF_upstream/grails-app/controllers/org/openlab/navigation/ProjectTreeController.groovy: 36: unable to resolve class org.openlab.genetracker.CellLineData | |
| @ line 36, column 1. | |
| import org.openlab.genetracker.CellLineData | |
| ^ | |
| /home/gus/src/OLF_upstream/grails-app/controllers/org/openlab/navigation/ProjectTreeController.groovy: 32: unable to resolve class org.openlab.main.Project | |
| @ line 32, column 1. | |
| import org.openlab.main.Project | |
| ^ | |
| /home/gus/src/OLF_upstream/grails-app/controllers/org/openlab/navigation/ProjectTreeController.groovy: 35: unable to resolve class org.openlab.genetracker.Recombinant | |
| @ line 35, column 1. | |
| import org.openlab.genetracker.Recombinant | |
| ^ | |
| /home/gus/src/OLF_upstream/grails-app/controllers/org/openlab/search/FullSearchController.groovy: 34: unable to resolve class org.openlab.main.DataObject | |
| @ line 34, column 1. | |
| import org.openlab.main.DataObject | |
| ^ | |
| /home/gus/src/OLF_upstream/grails-app/controllers/org/openlab/search/QuickSearchController.groovy: 35: unable to resolve class org.openlab.main.DataObject | |
| @ line 35, column 1. | |
| import org.openlab.main.DataObject | |
| ^ | |
| /home/gus/src/OLF_upstream/grails-app/controllers/security/RoleController.groovy: 32: unable to resolve class org.openlab.security.Role | |
| @ line 32, column 1. | |
| import org.openlab.security.Role | |
| ^ | |
| /home/gus/src/OLF_upstream/grails-app/controllers/security/UserController.groovy: 33: unable to resolve class org.openlab.security.User | |
| @ line 33, column 1. | |
| import org.openlab.security.User | |
| ^ | |
| /home/gus/src/OLF_upstream/grails-app/controllers/security/UserController.groovy: 34: unable to resolve class org.openlab.security.UserRole | |
| @ line 34, column 1. | |
| import org.openlab.security.UserRole | |
| ^ | |
| /home/gus/src/OLF_upstream/grails-app/controllers/security/UserController.groovy: 32: unable to resolve class org.openlab.security.Role | |
| @ line 32, column 1. | |
| import org.openlab.security.Role | |
| ^ | |
| /home/gus/src/OLF_upstream/grails-app/controllers/security/UserGroupController.groovy: 32: unable to resolve class org.openlab.security.UserGroup | |
| @ line 32, column 1. | |
| import org.openlab.security.UserGroup | |
| ^ | |
| 103 errors |
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