war_output.txt

| Loading Grails 2.2.5
| Configuring classpath
Cannot find plugin descriptor for path '/home/gus/src/OLF_upstream/modules/OpenLabBackend'.
| Configuring classpath.
| Environment set to production
| Environment set to production.
| Environment set to production..
| Environment set to production...
| Environment set to production....
| Environment set to production.....
| Packaging Grails application
| Packaging Grails application.
| Packaging Grails application..
| Compiling 326 source files

| Compiling 326 source files.
| Error Compilation error: startup failed:
/home/gus/src/OLF_upstream/modules/OpenLabBarcode/grails-app/modules/org/openlab/module/addin/BarcodeCreationAddinModule.groovy: 34: unable to resolve class AddinModule 
 @ line 34, column 1.
   class BarcodeCreationAddinModule implements AddinModule{
   ^

/home/gus/src/OLF_upstream/modules/OpenLabBarcode/grails-app/modules/org/openlab/module/menu/barcodeMenuModule.groovy: 36: unable to resolve class MenuModule 
 @ line 36, column 1.
   class barcodeMenuModule implements MenuModule{
   ^

/home/gus/src/OLF_upstream/modules/OpenLabBarcode/grails-app/modules/org/openlab/module/operations/PrintBarcodeLabelOperationModule.groovy: 36: unable to resolve class Module 
 @ line 36, column 1.
   class PrintBarcodeLabelOperationModule implements Module{
   ^

/home/gus/src/OLF_upstream/modules/OpenLabNotes/grails-app/jobs/NoteValidationJob.groovy: 1: unable to resolve class org.openlab.security.User
 @ line 1, column 1.
   import org.openlab.security.User
   ^

/home/gus/src/OLF_upstream/modules/OpenLabGeneTracker/grails-app/modules/org/openlab/module/addin/GeneLegendAddinModule.groovy: 34: unable to resolve class AddinModule 
 @ line 34, column 1.
   class GeneLegendAddinModule implements AddinModule{
   ^

/home/gus/src/OLF_upstream/modules/OpenLabGeneTracker/grails-app/modules/org/openlab/module/menu/CellLineMenuModule.groovy: 35: unable to resolve class MenuModule 
 @ line 35, column 1.
   class CellLineMenuModule implements MenuModule{
   ^

/home/gus/src/OLF_upstream/modules/OpenLabGeneTracker/grails-app/modules/org/openlab/module/menu/MasterDataMenuModule.groovy: 35: unable to resolve class MenuModule 
 @ line 35, column 1.
   class MasterDataMenuModule implements MenuModule{
   ^

/home/gus/src/OLF_upstream/modules/OpenLabGeneTracker/grails-app/modules/org/openlab/module/menu/geneMenuModule.groovy: 35: unable to resolve class MenuModule 
 @ line 35, column 1.
   class geneMenuModule implements MenuModule{
   ^

/home/gus/src/OLF_upstream/modules/OpenLabGeneTracker/grails-app/modules/org/openlab/module/operations/CellLineDataOperationsModule.groovy: 35: unable to resolve class Module 
 @ line 35, column 1.
   class CellLineDataOperationsModule implements Module{
   ^

/home/gus/src/OLF_upstream/modules/OpenLabGeneTracker/grails-app/modules/org/openlab/module/operations/GeneOperationsModule.groovy: 35: unable to resolve class Module 
 @ line 35, column 1.
   class GeneOperationsModule implements Module{
   ^

/home/gus/src/OLF_upstream/modules/OpenLabGeneTracker/grails-app/modules/org/openlab/module/operations/RecombinantOperationsModule.groovy: 33: unable to resolve class org.openlab.module.Module
 @ line 33, column 1.
   import org.openlab.module.Module
   ^

/home/gus/src/OLF_upstream/modules/OpenLabGeneTracker/grails-app/modules/org/openlab/module/operations/RecombinantOperationsModule.groovy: 36: unable to resolve class org.openlab.module.Module 
 @ line 36, column 1.
   class RecombinantOperationsModule implements Module{
   ^

/home/gus/src/OLF_upstream/modules/OpenLabGeneTracker/grails-app/modules/org/openlab/module/tab/AntibioticsModule.groovy: 35: unable to resolve class Module 
 @ line 35, column 1.
   class AntibioticsModule implements Module{
   ^

/home/gus/src/OLF_upstream/modules/OpenLabGeneTracker/grails-app/modules/org/openlab/module/tab/CellLineDataModule.groovy: 35: unable to resolve class Module 
 @ line 35, column 1.
   class CellLineDataModule implements Module{
   ^

/home/gus/src/OLF_upstream/modules/OpenLabGeneTracker/grails-app/modules/org/openlab/module/tab/GeneVariantModule.groovy: 36: unable to resolve class Module 
 @ line 36, column 1.
   class GeneVariantModule implements Module{
   ^

/home/gus/src/OLF_upstream/modules/OpenLabGeneTracker/grails-app/modules/org/openlab/module/tab/GeneVectorModule.groovy: 36: unable to resolve class Module 
 @ line 36, column 1.
   class GeneVectorModule implements Module{
   ^

/home/gus/src/OLF_upstream/modules/OpenLabGeneTracker/grails-app/modules/org/openlab/module/tab/NCBISequenceViewerModule.groovy: 34: unable to resolve class Module 
 @ line 34, column 1.
   class NCBISequenceViewerModule implements Module{
   ^

/home/gus/src/OLF_upstream/modules/OpenLabGeneTracker/grails-app/modules/org/openlab/module/tab/PassageModule.groovy: 36: unable to resolve class Module 
 @ line 36, column 1.
   public class PassageModule implements Module {
   ^

/home/gus/src/OLF_upstream/modules/OpenLabGeneTracker/grails-app/modules/org/openlab/module/tab/PrimerModule.groovy: 33: unable to resolve class org.openlab.module.Module
 @ line 33, column 1.
   import org.openlab.module.Module;
   ^

/home/gus/src/OLF_upstream/modules/OpenLabGeneTracker/grails-app/modules/org/openlab/module/tab/PrimerModule.groovy: 41: unable to resolve class org.openlab.module.Module 
 @ line 41, column 1.
   class PrimerModule implements Module {
   ^

/home/gus/src/OLF_upstream/modules/OpenLabGeneTracker/grails-app/modules/org/openlab/module/tab/ViabilityModule.groovy: 35: unable to resolve class Module 
 @ line 35, column 1.
   class ViabilityModule implements Module{
   ^

/home/gus/src/OLF_upstream/modules/OpenLabStorage/grails-app/conf/org/openlab/storage/DeleteFilters.groovy: 33: unable to resolve class org.openlab.main.SubDataObject
 @ line 33, column 1.
   import org.openlab.main.SubDataObject
   ^

/home/gus/src/OLF_upstream/modules/OpenLabStorage/grails-app/conf/org/openlab/storage/DeleteFilters.groovy: 32: unable to resolve class org.openlab.main.DataObject
 @ line 32, column 1.
   import org.openlab.main.DataObject
   ^

/home/gus/src/OLF_upstream/modules/OpenLabStorage/grails-app/conf/org/openlab/storage/DeleteFilters.groovy: 49: unable to resolve class org.openlab.main.DataObject 
 @ line 49, column 45.
         if(params.id) dataObj = DataObject
                                 ^

/home/gus/src/OLF_upstream/modules/OpenLabStorage/grails-app/conf/org/openlab/storage/DeleteFilters.groovy: 50: unable to resolve class org.openlab.main.SubDataObject 
 @ line 50, column 48.
      if(params.id) subDataObj = SubDataObj
                                 ^

/home/gus/src/OLF_upstream/modules/OpenLabBarcode/grails-app/conf/org/openlab/barcode/DeleteFilters.groovy: 32: unable to resolve class org.openlab.main.DataObject
 @ line 32, column 1.
   import org.openlab.main.DataObject
   ^

/home/gus/src/OLF_upstream/modules/OpenLabBarcode/grails-app/conf/org/openlab/barcode/DeleteFilters.groovy: 46: unable to resolve class org.openlab.main.DataObject 
 @ line 46, column 35.
                       def dataObj = DataObject.get(params.id)
                                     ^

/home/gus/src/OLF_upstream/modules/OpenLabGeneTracker/grails-app/domain/org/openlab/genetracker/Antibiotics.groovy: 34: unable to resolve class MasterDataObject 
 @ line 34, column 1.
   class Antibiotics extends MasterDataObject{
   ^

/home/gus/src/OLF_upstream/modules/OpenLabGeneTracker/grails-app/domain/org/openlab/genetracker/CellLine.groovy: 34: unable to resolve class MasterDataObject 
 @ line 34, column 1.
   class CellLine extends MasterDataObject {
   ^

/home/gus/src/OLF_upstream/modules/OpenLabGeneTracker/grails-app/domain/org/openlab/genetracker/CellLineData.groovy: 33: unable to resolve class org.openlab.main.DataObject
 @ line 33, column 1.
   import org.openlab.main.DataObject
   ^

/home/gus/src/OLF_upstream/modules/OpenLabGeneTracker/grails-app/domain/org/openlab/genetracker/CellLineData.groovy: 34: unable to resolve class org.openlab.main.Project
 @ line 34, column 1.
   import org.openlab.main.Project
   ^

/home/gus/src/OLF_upstream/modules/OpenLabGeneTracker/grails-app/domain/org/openlab/genetracker/CellLineData.groovy: 36: unable to resolve class org.openlab.main.DataObject 
 @ line 36, column 1.
   class CellLineData extends DataObject {
   ^

/home/gus/src/OLF_upstream/modules/OpenLabGeneTracker/grails-app/domain/org/openlab/genetracker/CellLineData.groovy: 82: unable to resolve class org.openlab.main.Project 
 @ line 82, column 66.
   es: MediumAdditive, projects: Project]
                                 ^

/home/gus/src/OLF_upstream/modules/OpenLabGeneTracker/grails-app/domain/org/openlab/genetracker/CultureMedia.groovy: 32: unable to resolve class org.openlab.main.MasterDataObject
 @ line 32, column 1.
   import org.openlab.main.MasterDataObject
   ^

/home/gus/src/OLF_upstream/modules/OpenLabGeneTracker/grails-app/domain/org/openlab/genetracker/CultureMedia.groovy: 34: unable to resolve class org.openlab.main.MasterDataObject 
 @ line 34, column 1.
   class CultureMedia extends MasterDataObject {
   ^

/home/gus/src/OLF_upstream/modules/OpenLabGeneTracker/grails-app/domain/org/openlab/genetracker/Gene.groovy: 32: unable to resolve class org.openlab.main.DataObject
 @ line 32, column 1.
   import org.openlab.main.DataObject;
   ^

/home/gus/src/OLF_upstream/modules/OpenLabGeneTracker/grails-app/domain/org/openlab/genetracker/Gene.groovy: 34: unable to resolve class org.openlab.main.Project
 @ line 34, column 1.
   import org.openlab.main.Project;
   ^

/home/gus/src/OLF_upstream/modules/OpenLabGeneTracker/grails-app/domain/org/openlab/genetracker/Gene.groovy: 36: unable to resolve class org.openlab.main.DataObject 
 @ line 36, column 1.
   public class Gene extends DataObject implements Serializable{
   ^

/home/gus/src/OLF_upstream/modules/OpenLabGeneTracker/grails-app/domain/org/openlab/genetracker/Gene.groovy: 87: unable to resolve class org.openlab.main.Project 
 @ line 87, column 22.
   	static belongsTo = [Project]
                        ^

/home/gus/src/OLF_upstream/modules/OpenLabGeneTracker/grails-app/domain/org/openlab/genetracker/Gene.groovy: 89: unable to resolve class org.openlab.main.Project 
 @ line 89, column 30.
   	static hasMany = [projects: Project]
                                ^

/home/gus/src/OLF_upstream/modules/OpenLabGeneTracker/grails-app/domain/org/openlab/genetracker/MediumAdditive.groovy: 34: unable to resolve class MasterDataObject 
 @ line 34, column 1.
   class MediumAdditive extends MasterDataObject {
   ^

/home/gus/src/OLF_upstream/modules/OpenLabGeneTracker/grails-app/domain/org/openlab/genetracker/Organism.groovy: 34: unable to resolve class MasterDataObject 
 @ line 34, column 1.
   class Organism extends MasterDataObject{
   ^

/home/gus/src/OLF_upstream/modules/OpenLabGeneTracker/grails-app/domain/org/openlab/genetracker/Origin.groovy: 34: unable to resolve class MasterDataObject 
 @ line 34, column 1.
   class Origin extends MasterDataObject{
   ^

/home/gus/src/OLF_upstream/modules/OpenLabGeneTracker/grails-app/domain/org/openlab/genetracker/Passage.groovy: 35: unable to resolve class SubDataObject 
 @ line 35, column 1.
   class Passage extends SubDataObject{
   ^

/home/gus/src/OLF_upstream/modules/OpenLabGeneTracker/grails-app/domain/org/openlab/genetracker/Passage.groovy: 45: unable to resolve class User 
 @ line 45, column 5.
       User researcher
       ^

/home/gus/src/OLF_upstream/modules/OpenLabGeneTracker/grails-app/domain/org/openlab/genetracker/Primer.groovy: 34: unable to resolve class SubDataObject 
 @ line 34, column 1.
   class Primer extends SubDataObject{
   ^

/home/gus/src/OLF_upstream/modules/OpenLabGeneTracker/grails-app/domain/org/openlab/genetracker/Recombinant.groovy: 35: unable to resolve class DataObject 
 @ line 35, column 1.
   class Recombinant extends DataObject{
   ^

/home/gus/src/OLF_upstream/modules/OpenLabGeneTracker/grails-app/domain/org/openlab/genetracker/Viability.groovy: 34: unable to resolve class org.openlab.security.User
 @ line 34, column 1.
   import org.openlab.security.User;
   ^

/home/gus/src/OLF_upstream/modules/OpenLabGeneTracker/grails-app/domain/org/openlab/genetracker/Viability.groovy: 36: unable to resolve class SubDataObject 
 @ line 36, column 1.
   class Viability extends SubDataObject
   ^

/home/gus/src/OLF_upstream/modules/OpenLabGeneTracker/grails-app/domain/org/openlab/genetracker/Viability.groovy: 47: unable to resolve class org.openlab.security.User 
 @ line 47, column 2.
   	User researcher
    ^

/home/gus/src/OLF_upstream/modules/OpenLabAttachments/grails-app/conf/openlab/attachments/DeleteFilters.groovy: 32: unable to resolve class org.openlab.main.DataObject
 @ line 32, column 1.
   import org.openlab.main.DataObject
   ^

/home/gus/src/OLF_upstream/modules/OpenLabAttachments/grails-app/conf/openlab/attachments/DeleteFilters.groovy: 43: unable to resolve class org.openlab.main.DataObject 
 @ line 43, column 35.
                       def dataObj = DataObject.get(params.id)
                                     ^

/home/gus/src/OLF_upstream/modules/OpenLabAttachments/grails-app/modules/org/openlab/module/addin/AttachmentAddinModule.groovy: 34: unable to resolve class AddinModule 
 @ line 34, column 1.
   public class AttachmentAddinModule implements AddinModule{
   ^

/home/gus/src/OLF_upstream/modules/OpenLabAttachments/grails-app/modules/org/openlab/module/menu/AttachmentsMenuModule.groovy: 35: unable to resolve class MenuModule 
 @ line 35, column 1.
   class AttachmentsMenuModule implements MenuModule{
   ^

/home/gus/src/OLF_upstream/modules/OpenLabAttachments/grails-app/modules/org/openlab/module/tab/AttachmentsTabModule.groovy: 36: unable to resolve class Module 
 @ line 36, column 1.
   class AttachmentsTabModule implements Module{
   ^

/home/gus/src/OLF_upstream/modules/OpenLabNotes/grails-app/modules/org/openlab/module/menu/NoteMenuModule.groovy: 4: unable to resolve class org.openlab.module.MenuModule
 @ line 4, column 1.
   import org.openlab.module.MenuModule
   ^

/home/gus/src/OLF_upstream/modules/OpenLabNotes/grails-app/modules/org/openlab/module/menu/NoteMenuModule.groovy: 6: unable to resolve class org.openlab.module.MenuModule 
 @ line 6, column 1.
   class NoteMenuModule implements MenuModule{
   ^

/home/gus/src/OLF_upstream/modules/OpenLabBarcode/grails-app/domain/org/openlab/barcode/Barcode.groovy: 50: unable to resolve class SubDataObject 
 @ line 50, column 2.
   	SubDataObject subDataObject
    ^

/home/gus/src/OLF_upstream/modules/OpenLabBarcode/grails-app/domain/org/openlab/barcode/Barcode.groovy: 51: unable to resolve class DataObject 
 @ line 51, column 2.
   	DataObject dataObject
    ^

/home/gus/src/OLF_upstream/modules/OpenLabBarcode/grails-app/domain/org/openlab/barcode/BarcodeDataObject.groovy: 32: unable to resolve class org.openlab.main.DataObject
 @ line 32, column 1.
   import org.openlab.main.DataObject;
   ^

/home/gus/src/OLF_upstream/modules/OpenLabNotes/grails-app/controllers/org/openlab/notes/NoteItemController.groovy: 24: unable to resolve class org.openlab.security.User
 @ line 24, column 1.
   import org.openlab.security.User
   ^

/home/gus/src/OLF_upstream/modules/OpenLabNotes/grails-app/controllers/org/openlab/notes/NoteItemController.groovy: 46: unable to resolve class org.openlab.security.User 
 @ line 46, column 8.
   		User loggedInUser = springSecurityService.currentUser
          ^

/home/gus/src/OLF_upstream/modules/OpenLabNotes/grails-app/controllers/org/openlab/notes/NoteItemController.groovy: 53: unable to resolve class org.openlab.security.User 
 @ line 53, column 8.
   		User loggedInUser = springSecurityService.currentUser
          ^

/home/gus/src/OLF_upstream/modules/OpenLabBarcode/grails-app/controllers/org/openlab/barcode/BarcodeController.groovy: 166: unable to resolve class DataObject 
 @ line 166, column 39.
   				else if(objectInstance instanceof DataObject)
                                         ^

/home/gus/src/OLF_upstream/modules/OpenLabStorage/grails-app/domain/org/openlab/storage/StorageElement.groovy: 40: unable to resolve class DataObject 
 @ line 40, column 2.
   	DataObject dataObj
    ^

/home/gus/src/OLF_upstream/modules/OpenLabStorage/grails-app/domain/org/openlab/storage/StorageElement.groovy: 41: unable to resolve class SubDataObject 
 @ line 41, column 5.
       SubDataObject subDataObj
       ^

/home/gus/src/OLF_upstream/modules/OpenLabNotes/grails-app/domain/org/openlab/notes/NoteItem.groovy: 7: unable to resolve class org.openlab.security.User
 @ line 7, column 1.
   import org.openlab.security.User
   ^

/home/gus/src/OLF_upstream/modules/OpenLabNotes/grails-app/domain/org/openlab/notes/NoteItem.groovy: 3: unable to resolve class org.openlab.main.DataObject
 @ line 3, column 1.
   import org.openlab.main.DataObject
   ^

/home/gus/src/OLF_upstream/modules/OpenLabNotes/grails-app/domain/org/openlab/notes/NoteItem.groovy: 9: unable to resolve class org.openlab.main.DataObject 
 @ line 9, column 1.
   class NoteItem extends DataObject{
   ^

/home/gus/src/OLF_upstream/modules/OpenLabNotes/grails-app/domain/org/openlab/notes/NoteItem.groovy: 15: unable to resolve class org.openlab.security.User 
 @ line 15, column 2.
   	User supervisor
    ^

/home/gus/src/OLF_upstream/modules/OpenLabNotes/grails-app/domain/org/openlab/notes/UserPGP.groovy: 3: unable to resolve class org.openlab.security.User
 @ line 3, column 1.
   import org.openlab.security.User
   ^

/home/gus/src/OLF_upstream/modules/OpenLabNotes/grails-app/domain/org/openlab/notes/UserPGP.groovy: 9: unable to resolve class org.openlab.security.User 
 @ line 9, column 2.
   	User owner
    ^

/home/gus/src/OLF_upstream/modules/OpenLabStorage/grails-app/modules/org/openlab/module/menu/StorageMenuModule.groovy: 35: unable to resolve class MenuModule 
 @ line 35, column 1.
   class StorageMenuModule implements MenuModule{
   ^

/home/gus/src/OLF_upstream/modules/OpenLabStorage/grails-app/modules/org/openlab/module/tab/StorageModule.groovy: 35: unable to resolve class org.openlab.main.DataObject
 @ line 35, column 1.
   import org.openlab.main.DataObject
   ^

/home/gus/src/OLF_upstream/modules/OpenLabStorage/grails-app/modules/org/openlab/module/tab/StorageModule.groovy: 37: unable to resolve class Module 
 @ line 37, column 1.
   public class StorageModule implements Module{
   ^

/home/gus/src/OLF_upstream/modules/OpenLabStorage/grails-app/controllers/org/openlab/storage/StorageController.groovy: 35: unable to resolve class org.openlab.main.Project
 @ line 35, column 1.
   import org.openlab.main.Project
   ^

/home/gus/src/OLF_upstream/modules/OpenLabGeneTracker/grails-app/controllers/org/openlab/genetracker/GeneController.groovy: 41: unable to resolve class DataObjectController 
 @ line 41, column 1.
   class GeneController extends DataObjectController{
   ^

/home/gus/src/OLF_upstream/modules/OpenLabGeneTracker/grails-app/controllers/org/openlab/genetracker/OrganismController.groovy: 34: unable to resolve class MainController 
 @ line 34, column 1.
   class OrganismController extends MainController
   ^

/home/gus/src/OLF_upstream/modules/OpenLabGeneTracker/grails-app/controllers/org/openlab/genetracker/StatsController.groovy: 35: unable to resolve class org.openlab.security.User
 @ line 35, column 1.
   import org.openlab.security.User
   ^

/home/gus/src/OLF_upstream/modules/OpenLabGeneTracker/grails-app/controllers/org/openlab/genetracker/StatsController.groovy: 34: unable to resolve class org.openlab.main.Laboratory
 @ line 34, column 1.
   import org.openlab.main.Laboratory
   ^

/home/gus/src/OLF_upstream/modules/OpenLabGeneTracker/grails-app/controllers/org/openlab/genetracker/StatsController.groovy: 32: unable to resolve class org.openlab.main.Project
 @ line 32, column 1.
   import org.openlab.main.Project
   ^

/home/gus/src/OLF_upstream/modules/OpenLabAttachments/grails-app/domain/openlab/attachments/DataObjectAttachment.groovy: 33: unable to resolve class org.openlab.main.MainObject
 @ line 33, column 1.
   import org.openlab.main.MainObject
   ^

/home/gus/src/OLF_upstream/modules/OpenLabAttachments/grails-app/domain/openlab/attachments/DataObjectAttachment.groovy: 32: unable to resolve class org.openlab.main.DataObject
 @ line 32, column 1.
   import org.openlab.main.DataObject
   ^

/home/gus/src/OLF_upstream/modules/OpenLabAttachments/grails-app/domain/openlab/attachments/DataObjectAttachment.groovy: 43: unable to resolve class org.openlab.main.DataObject 
 @ line 43, column 36.
       static hasMany = [dataObjects: DataObject]
                                      ^

84 errors