zbounik

#!/usr/bin/env python2
# -*- coding: utf-8 -*-
"""
Created on Wed Jan 23 13:13:55 2019
@author: zahra
"""

import Sofa

def createScene(rootNode):

zbounik

$MeshFormat
2.2 0 8
$EndMeshFormat
$Nodes
35
1 -0.61499337 -0.0484317699 5.36816453
2 0.812514411 -0.224246388 3.92371916
3 -0.286570095 0.448780059 4.16442226
4 -2.21090404 0.754796302 1.79384971
5 -1.53226451 1.92160278 2.16019369

zbounik

import Sofa
#import numpy as np
#import os
#import os
#from time import gmtime, strftime
import time
#from datetime import datetime


############## to count the simulation time

zbounik

$MeshFormat
2.2 0 8
$EndMeshFormat
$Nodes
35
1 -0.61499337 -0.0484317699 5.36816453
2 0.812514411 -0.224246388 3.92371916
3 -0.286570095 0.448780059 4.16442226
4 -2.21090404 0.754796302 1.79384971
5 -1.53226451 1.92160278 2.16019369

zbounik

#!/usr/bin/env python2
# -*- coding: utf-8 -*-
"""
Created on Mon Jan  7 06:28:55 2019

@author: zahra
"""

import Sofa
#import time

zbounik

<?xml version="1.0"?>
<Node 	 name="root"  gravity="0 -9.81 0"  dt="0.02"  >
	<VisualStyle name="visualStyle1"  displayFlags="showForceFields" />
	<DefaultPipeline name="CollisionPipeline"  verbose="0" />
	<BruteForceDetection name="N2" />
	<DefaultContactManager name="collision response"  response="default" />
	<DiscreteIntersection name="discreteIntersection1" />
	<Node 	 name="LiverFEM"  gravity="0 -9.81 0"  >
		<EulerImplicitSolver name="cg_odesolver"  printLog="0" />
		<CGLinearSolver template="GraphScattered" name="linear solver"  iterations="25"  tolerance="1e-09"  threshold="1e-09" />

zbounik

/******************************************************************************
*       SOFA, Simulation Open-Framework Architecture, v17.06                  *
*                (c) 2006-2017 INRIA, USTL, UJF, CNRS, MGH                    *
*                                                                             *
* This program is free software; you can redistribute it and/or modify it     *
* under the terms of the GNU Lesser General Public License as published by    *
* the Free Software Foundation; either version 2.1 of the License, or (at     *
* your option) any later version.                                             *
*                                                                             *
* This program is distributed in the hope that it will be useful, but WITHOUT *

zbounik

/******************************************************************************
*       SOFA, Simulation Open-Framework Architecture, v17.06                  *
*                (c) 2006-2017 INRIA, USTL, UJF, CNRS, MGH                    *
*                                                                             *
* This program is free software; you can redistribute it and/or modify it     *
* under the terms of the GNU Lesser General Public License as published by    *
* the Free Software Foundation; either version 2.1 of the License, or (at     *
* your option) any later version.                                             *
*                                                                             *
* This program is distributed in the hope that it will be useful, but WITHOUT *

zbounik

<?xml version="1.0"?>
<Node 	 name="root"  gravity="0 -9.81 0"  dt="0.02"  >
	<VisualStyle name="visualStyle1"  displayFlags="showForceFields" />
	<DefaultPipeline name="CollisionPipeline"  verbose="0" />
	<BruteForceDetection name="N2" />
	<DefaultContactManager name="collision response"  response="default" />
	<DiscreteIntersection name="discreteIntersection1" />
	<Node 	 name="LiverFEM"  gravity="0 -9.81 0"  >
		<EulerImplicitSolver name="cg_odesolver"  printLog="0" />
		<CGLinearSolver template="GraphScattered" name="linear solver"  iterations="25"  tolerance="1e-09"  threshold="1e-09" />

zbounik

[WARNING] [DAGNode(root)] Sofa.Node.createObject(DefaultPipeline) called on a node(root) that is already initialized
[WARNING] [DAGNode(root)] Sofa.Node.createObject(BruteForceDetection) called on a node(root) that is already initialized
[WARNING] [DAGNode(root)] Sofa.Node.createObject(DefaultContactManager) called on a node(root) that is already initialized
[WARNING] [DAGNode(root)] Sofa.Node.createObject(DiscreteIntersection) called on a node(root) that is already initialized
[ERROR]   [SofaPython] cannot open file:liver_controller.py
[ERROR]   [PythonScript] IOError: [Errno 2] No such file or directory: 'liver_controller.py'

[ERROR]   [PythonScriptController(PythonScriptController)]  load error (file 'liver_controller.py' not parsable)
[WARNING] [DAGNode(root)] Sofa.Node.createObject(PythonScriptController) called on a node(root) that is already initialized