Pictures and measurements are coming soon.
Written for fairly adept technical users, preferably of Debian GNU/Linux, not for absolute beginners.
You'll probably be working with a single smartcard, so you'll want only one primary key ( |
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#!/bin/bash | |
## Prerequisites : | |
# smartmontools - Sudo command & espacially (sudo /usr/sbin/smartctl). | |
# MegaCli (MegaRAID) if needed. | |
# HP ACU Cli (HP RAID) if needed. | |
## Inside your file /etc/sudoers: | |
# backup ALL= NOPASSWD: sudo /sbin/MegaCli -pdlist -a0 | |
# backup ALL= NOPASSWD: sudo /usr/sbin/smartctl |
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# GOAL: Fetch VCFs generated by TCGA PancanAtlas MC3 unified variant calling effort and curate | |
########## | |
## DATA ## | |
########## | |
# Data from DNANexus/UCSC came in as 3 batches. Batches 1 and 2 had GATK cocleaned bams available, | |
# while batch 3 needed realignment. Batch 1 had RNA (to run radia), batch 2 didn't. Kyle Elrott | |
# is the point person for these batches. Available on GChat. | |
# Batches were later merged by Singer Ma at DNANexus, into a single folder called full_v1. |
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#!/bin/bash | |
BEACONFILE="./beaconfile.txt" | |
if [ -f $BEACONFILE ]; then | |
cat ./beaconfile.txt | |
rm ./beaconfile.txt | |
fi |
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# OSX for Hackers (Mavericks/Yosemite) | |
# | |
# Source: https://gist.github.com/brandonb927/3195465 | |
#!/bin/sh | |
# Some things taken from here | |
# https://github.com/mathiasbynens/dotfiles/blob/master/.osx | |
# Ask for the administrator password upfront |
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awk 'BEGIN{OFS="\t"}; NR>=5 { chrName=$3; if ($3 ~ "MT") chrName ="M"; if ($4 && $2 ~ "^i") print "chr" chrName, $4, $4, $2}' snps.data > BEDfile |
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/* demo.css */ | |
.axis { | |
stroke: #000; | |
stroke-width: 1.5px; | |
} | |
#demo_1 svg, #demo_2 svg { border: solid 1px #ccc; } |