nathanhaigh

#!/bin/bash
# Usage: deinterleave_fastq.sh < interleaved.fastq f.fastq r.fastq [compress]
# 
# Deinterleaves a FASTQ file of paired reads into two FASTQ
# files specified on the command line. Optionally GZip compresses the output
# FASTQ files using pigz if the 3rd command line argument is the word "compress"
# 
# Can deinterleave 100 million paired reads (200 million total
# reads; a 43Gbyte file), in memory (/dev/shm), in 4m15s (255s)
# 

evandrix

Here are a list of headless browsers that I know about:

• [HtmlUnit][1] - Java. Custom browser engine. JavaScript support/DOM emulated. Open source.
• [Ghost][2] - Python only. WebKit-based. Full JavaScript support. Open source.
• [Twill][3] - Python/command line. Custom browser engine. No JavaScript. Open source.
• [PhantomJS][4] - Command line/all platforms. WebKit-based. Full JavaScript support. Open source.
• [Awesomium][5] - C++/.Net/all platforms. Chromium-based. Full JavaScript support. Commercial/free.
• [SimpleBrowser][6] - .Net 4/C#. Custom browser engine. No JavaScript support. Open source.
• [ZombieJS][7] - Node.js. Custom browser engine. JavaScript support/emulated DOM. Open source.
• [EnvJS][8] - JavaScript via Java/Rhino. Custom browser engine. JavaScript support/emulated DOM. Open source.

zziuni

# source : http://code.google.com/p/natvpn/source/browse/trunk/stun_server_list
# A list of available STUN server.

stun.l.google.com:19302
stun1.l.google.com:19302
stun2.l.google.com:19302
stun3.l.google.com:19302
stun4.l.google.com:19302
stun01.sipphone.com
stun.ekiga.net

coopermaruyama

## Get FFMpeg working on heroku by building binaries using vulcan

gem install vulcan

vulcan create foo

git clone --depth 1 git://source.ffmpeg.org/ffmpeg

cd ffmpeg

nathanhaigh

#!/bin/bash
# Usage: interleave_fastq.sh f.fastq r.fastq > interleaved.fastq
# 
# Interleaves the reads of two FASTQ files specified on the
# command line and outputs a single FASTQ file of STDOUT.
# 
# Can interleave 100 million paired reads (200 million total
# reads; a 2 x 22Gbyte files), in memory (/dev/shm), in 6m54s (414s)
# 
# Latest code: https://gist.github.com/4544979

dergachev

OS X Screencast to animated GIF

This gist shows how to create a GIF screencast using only free OS X tools: QuickTime, ffmpeg, and gifsicle.

Instructions

To capture the video (filesize: 19MB), using the free "QuickTime Player" application:

bonsaiviking

#!/usr/bin/env python

import struct

def rightrotate(i, n, wsize):
    return ((i << (wsize-n)) & (2**wsize-1)) | (i >> n)

class SHA2(object):
    """Abstract class for SHA-2 variants"""
    def __init__(self):

philchristensen

#!/usr/bin/env python
# encoding: utf-8
"""
django.cgi

A simple cgi script which uses the django WSGI to serve requests.

Code copy/pasted from PEP-0333 and then tweaked to serve django.
http://www.python.org/dev/peps/pep-0333/#the-server-gateway-side

wsargent

303 See Other

Location: https://github.com/wsargent/docker-cheat-sheet

Hi there!

The docker cheat sheet has moved to a Github project under https://github.com/wsargent/docker-cheat-sheet.

Please click on the link above to go to the cheat sheet.

iepathos

# Dictionaries are inherently orderless, but lists are ordered!

import collections

d = { '123': { 'key1': 3, 'key2': 11, 'key3': 3 }, 
	  '124': { 'key1': 6, 'key2': 56, 'key3': 6 }, 
	  '125': { 'key1': 7, 'key2': 44, 'key3': 9 } }

results_list = []
sort_by_dict = {}