nathanhaigh

#!/bin/bash
# Usage: interleave_fastq.sh f.fastq r.fastq > interleaved.fastq
# 
# Interleaves the reads of two FASTQ files specified on the
# command line and outputs a single FASTQ file of STDOUT.
# 
# Can interleave 100 million paired reads (200 million total
# reads; a 2 x 22Gbyte files), in memory (/dev/shm), in 6m54s (414s)
# 
# Latest code: https://gist.github.com/4544979

coopermaruyama

## Get FFMpeg working on heroku by building binaries using vulcan

gem install vulcan

vulcan create foo

git clone --depth 1 git://source.ffmpeg.org/ffmpeg

cd ffmpeg

zziuni

# source : http://code.google.com/p/natvpn/source/browse/trunk/stun_server_list
# A list of available STUN server.

stun.l.google.com:19302
stun1.l.google.com:19302
stun2.l.google.com:19302
stun3.l.google.com:19302
stun4.l.google.com:19302
stun01.sipphone.com
stun.ekiga.net

evandrix

Here are a list of headless browsers that I know about:

• [HtmlUnit][1] - Java. Custom browser engine. JavaScript support/DOM emulated. Open source.
• [Ghost][2] - Python only. WebKit-based. Full JavaScript support. Open source.
• [Twill][3] - Python/command line. Custom browser engine. No JavaScript. Open source.
• [PhantomJS][4] - Command line/all platforms. WebKit-based. Full JavaScript support. Open source.
• [Awesomium][5] - C++/.Net/all platforms. Chromium-based. Full JavaScript support. Commercial/free.
• [SimpleBrowser][6] - .Net 4/C#. Custom browser engine. No JavaScript support. Open source.
• [ZombieJS][7] - Node.js. Custom browser engine. JavaScript support/emulated DOM. Open source.
• [EnvJS][8] - JavaScript via Java/Rhino. Custom browser engine. JavaScript support/emulated DOM. Open source.

nathanhaigh

#!/bin/bash
# Usage: deinterleave_fastq.sh < interleaved.fastq f.fastq r.fastq [compress]
# 
# Deinterleaves a FASTQ file of paired reads into two FASTQ
# files specified on the command line. Optionally GZip compresses the output
# FASTQ files using pigz if the 3rd command line argument is the word "compress"
# 
# Can deinterleave 100 million paired reads (200 million total
# reads; a 43Gbyte file), in memory (/dev/shm), in 4m15s (255s)
# 

brandonb927

#!/bin/sh

###
# SOME COMMANDS WILL NOT WORK ON macOS (Sierra or newer)
# For Sierra or newer, see https://github.com/mathiasbynens/dotfiles/blob/master/.macos
###

# Alot of these configs have been taken from the various places
# on the web, most from here
# https://github.com/mathiasbynens/dotfiles/blob/5b3c8418ed42d93af2e647dc9d122f25cc034871/.osx

1337

#!/usr/bin/env python
                                                                               # PEP 20 supersedes PEP 8 http://www.python.org/dev/peps/pep-0008/#a-foolish-consistency-is-the-hobgoblin-of-little-minds
                                                                               # Follow PEP 20 if readability is affected by PEP 8

                                                                               # max length 79 chars, not 80 (http://www.python.org/dev/peps/pep-0008/#maximum-line-length)
"""One-line summary of purpose.                                                # double quoted docstrings; max length 72 chars (http://www.python.org/dev/peps/pep-0008/#maximum-line-length)
                                                                               # 2nd line must be blank http://www.python.org/dev/peps/pep-0257/#multi-line-docstrings
More things                                                                    # aligns with the quotes
More things
"""                     

trevorsheridan

Postgres manual located here: http://www.postgresql.org/docs/8.4/interactive/index.html
These instructions should work for Postgres 8 and 9

1. INSTALL
$ cd ~/source
$ ftp http://ftp.postgresql.org/pub/source/v8.4.11/postgresql-8.4.11.tar.gz
$ tar -zxvf postgresql-8.4.11.tar.gz
$ rm -r postgresql-8.4.11.tar.gz
$ cd postgresql-8.4.11
$ ./configure

timoxley

var isPortTaken = function(port, fn) {
  var net = require('net')
  var tester = net.createServer()
  .once('error', function (err) {
    if (err.code != 'EADDRINUSE') return fn(err)
    fn(null, true)
  })
  .once('listening', function() {
    tester.once('close', function() { fn(null, false) })
    .close()

arbales

LINK_DETECTION_REGEX = /(([a-z]+:\/\/)?(([a-z0-9\-]+\.)+([a-z]{2}|aero|arpa|biz|com|coop|edu|gov|info|int|jobs|mil|museum|name|nato|net|org|pro|travel|local|internal))(:[0-9]{1,5})?(\/[a-z0-9_\-\.~]+)*(\/([a-z0-9_\-\.]*)(\?[a-z0-9+_\-\.%=&]*)?)?(#[a-zA-Z0-9!$&'()*+.=-_~:@/?]*)?)(\s+|$)/gi

EMOJI_DIRECTORY = "/path/to/assets/emoji/20x20"

# Handlebars is presumed, but you could swap out 
ESCAPE_EXPRESSION_FUNCTION = Handlebars.Utils.escapeExpression
MARKSAFE_FUNCTION = (str) -> new Handlebars.SafeString(str) 


# Emoji unicode chars become images.