behinger

"""
    dodge(x,y,args...;[plot_fun=scatter!,kwargs...])

dodges plot items if they are on the same `x` (or `y` if specified) value.

## Attributes
### Specific to `dodge`
- `plot_fun::Function = scatter!` in place plotting function to be called after dodging the x/y values
- `dodge::Vector{Int} = Makie.automatic`. Indicates to which group each point belongs, e.g. [1, 1, 2, 3, 2, 2]
- `n_dodge::Int = Makie.automatic` maximal number of dodglings. This indicates over how many "dodglings" `dodge_width` should be split

behinger

function tvm_showObjectContourOnSlice(configuration)
%
%
%   Copyright (C) Tim van Mourik, 2015, DCCN
%

%% Parse configuration
volume =            tvm_getOption(configuration, 'i_Volume');
    %no default
roi =               tvm_getOption(configuration, 'i_ROI', '');

behinger

function vif = VIF(X)
[n, k]  = size(X);
Exxprim = full(X'*X)/n; %I'm shocked if this isn't full so let's drop sparse now 
Ex   = full(mean(X))'; %same deal
COVX = (Exxprim - Ex*Ex');
STDEVX = sqrt(diag(COVX));
CORRX = COVX ./ (STDEVX * STDEVX');

invcorrx = inv(CORRX);
vif = diag(invcorrx);

behinger

model = "
data {
  vector[100] A;
}
parameters {
  real beta;
  real<lower=0> sigma;
}
model {
  A ~ normal(beta, sigma);

behinger

% Behinger version
% taken and adapted from ept_TFCE

% Licence from original:
% Copyright(C) 2012  Armand Mensen (14.12.2010)

% This program is free software: you can redistribute it and/or modify
% it under the terms of the GNU General Public License as published by
% the Free Software Foundation, either version 3 of the License, or
% (at your option) any later version.

behinger

% Behinger version
% taken and adapted from ept_TFCE

% Licence from original:
% Copyright(C) 2012  Armand Mensen (14.12.2010)

% This program is free software: you can redistribute it and/or modify
% it under the terms of the GNU General Public License as published by
% the Free Software Foundation, either version 3 of the License, or

behinger

# change to etcomp version (with all packages)
pyversion /net/store/nbp/users/behinger/projects/etcomp/local/etcompvenv/bin/python3
# add the functions
insert(py.sys.path,int32(0),'/net/store/nbp/users/behinger/projects/etcomp/code');
# add this path so that matlab can find etcomp/lib
insert(py.sys.path,int32(0),'/net/store/nbp/users/behinger/projects/etcomp/');
# call the function to import the data
data = py.functions.et_import.import_pl(pyargs('datapath','/net/store/nbp/projects/etcomp/VP1/raw','surfaceMap',0,'recalib',1))

behinger

% Behinger version
% taken and adapted from ept_TFCE

% Licence from original:
% Copyright(C) 2012  Armand Mensen (14.12.2010)

% This program is free software: you can redistribute it and/or modify
% it under the terms of the GNU General Public License as published by
% the Free Software Foundation, either version 3 of the License, or
% (at your option) any later version.

behinger

%fetch the Eyetracker
if EyelinkInit()~= 1; %
    return;
end;

%%%%%%%%%%%%%%%%%%%%%%%
  
Eyelink('command', '!*write_ioport 0x378 %d',params.trig_trialStart);
WaitSecs(0.005);
Eyelink('command', '!*write_ioport 0x378 %d',0);

behinger

function hitlistIncremental = manualCalibTool(calibtargets,fixlist1,fixlist2)
if nargin < 1
    % dummy variables with some noise in case of no input
    [xx, yy] = meshgrid(1:5,1:2);
    xx = xx(:);
    yy = yy(:);
    calibtargets = [xx yy];
    fixlist1 = [xx yy];
    fixlist2 = [xx yy];