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JupyterLab 3.3.2 on Binder

Forked from JupyterLab 3.3.1 on Binder and updated to 3.3.2.

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RetroLab with RTC Looking Classic on Binder

Try it on Binder!

RetroLab 0.3.13 featuring RTC with RetroLogo hidden to look more like the classic notebook, served on Binder

Based on RetroLab 0.3.2 on Binder where RTC works with RetroLab and then combined that with taking advantage of ability to hide the Retro_Logo use the Jupyter Logo to get something closer to the classic notebook where Real Time Colloaboration works. Idea is from here. Updated from version 0.3.2 to 0.3.13 (see releases here).

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import difflib
from wasabi import color

def diff_strings(a, b):
    output = []
    matcher = difflib.SequenceMatcher(None, a, b)
    for opcode, a0, a1, b0, b1 in matcher.get_opcodes():
        if opcode == "equal":
            output.append(a[a0:a1])
        elif opcode == "insert":

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import matplotlib.pyplot as plt
import seaborn as sns

from matplotlib.lines import Line2D

my_palette = sns.color_palette("cubehelix", 3)
sns.set_palette(my_palette)

def legend_circles(labels, palette, loc=1, markersize=10, marker='o', padding=0):
    "Make a legend where the color is indicated by a circle."

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# List unique values in a DataFrame column
df['Column Name'].unique()

# To extract a specific column (subset the dataframe), you can use [ ] (brackets) or attribute notation.
df.height
df['height']
# are same thing!!! (from http://www.stephaniehicks.com/learnPython/pages/pandas.html 
# -or-
# http://www.datacarpentry.org/python-ecology-lesson/02-index-slice-subset/)

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#!/usr/bin/env python

"""
Sequence-based structural alignment of two proteins.
"""

from __future__ import print_function, division

import argparse
import os

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""" Usage: python diff.py FILE1 FILE2

A primitive `diff` in 50 lines of Python.
Explained here: http://pynash.org/2013/02/26/diff-in-50-lines.html
"""

def longest_matching_slice(a, a0, a1, b, b0, b1):
    sa, sb, n = a0, b0, 0

    runs = {}