ravasthi

authors:
  hanzou:
    name: Hanzou Hattori
    display_name: Hanzou
    gravatar: c66919cb194f96c696c1da0c47354a6a
    email: hanzou@company.com
    web: http://company.com
    twitter: company
    github: hhattori
  jorgen:

pztrick

# Title: Fancyimage tag for Jekyll
# Authors: Devin Weaver (photos_tag.rb), Brian M. Clapper (img_popup.rb), Patrick Paul (this gist)
# Description: Takes full size image, automagically creates thumbnail at specified size, +fancybox
#
# Adapted from:
#   http://tritarget.org/blog/2012/05/07/integrating-photos-into-octopress-using-fancybox-and-plugin/
#   (photos_tag.rb) https://gist.github.com/2631877
#   (img_popup.rb) https://github.com/bmc/octopress-plugins/
#
# Syntax {% photo filename [tumbnail] [title] %}

brandonb927

#!/bin/sh

###
# SOME COMMANDS WILL NOT WORK ON macOS (Sierra or newer)
# For Sierra or newer, see https://github.com/mathiasbynens/dotfiles/blob/master/.macos
###

# Alot of these configs have been taken from the various places
# on the web, most from here
# https://github.com/mathiasbynens/dotfiles/blob/5b3c8418ed42d93af2e647dc9d122f25cc034871/.osx

schmurfy

# Install MacTex: http://mirror.ctan.org/systems/mac/mactex/mactex-basic.pkg

$ sudo chown -R `whoami` /usr/local/texlive
$ tlmgr update --self
$ tlmgr install ucs
$ tlmgr install etoolbox

# Install pandoc view homebrew

lmullen

" Find related Pandoc footnote numbers
" -------------------------------------------------------------------
" Vim's * key searches for the next instance of the word under the 
" cursor; Vim decides what counts as the boundary of a word with the 
" iskeyword option. This function toggles the special characters of a 
" Pandoc footnote in the form [^1] to allow you to jump between 
" footnotes with the * key.
nnoremap _fn :call ToggleFootnoteJumping()<CR>
function! ToggleFootnoteJumping()
  if exists("g:FootnoteJumping") 

jbenet

a simple git branching model (written in 2013)

This is a very simple git workflow. It (and variants) is in use by many people. I settled on it after using it very effectively at Athena. GitHub does something similar; Zach Holman mentioned it in this talk.

Update: Woah, thanks for all the attention. Didn't expect this simple rant to get popular.

mdml

A dendrogram is a common way to represent hierarchical data. For Python users, Scipy has a hierarchical clustering module that performs hierarchical clustering and outputs the results as dendrogram plots via matplotlib. When it's time to make a prettier, more customized, or web-version of the dendogram, however, it can be tricky to use Scipy's dendrogram to create a suitable visualization. My preferred method of visualizing data -- especially on the web -- is D3. This example includes a script to convert a Scipy dendrogram into JSON format used by D3's cluster method.

In the example, I cluster six genes by their expression values from two experiments. You can easily replace that data with your own, larger data set, to harness the power of both Scipy and D3 for analyzing hierarchical data. The D3 code I used to generate this example is straigh

lmullen

library(rgdal)     # R wrapper around GDAL/OGR
library(ggplot2)   # for general plotting
library(ggmaps)    # for fortifying shapefiles

# First read in the shapefile, using the path to the shapefile and the shapefile name minus the
# extension as arguments
shapefile <- readOGR("path/to/shapefile/", "name_of_shapefile")

# Next the shapefile has to be converted to a dataframe for use in ggplot2
shapefile_df <- fortify(shapefile)

wcaleb

<?xml version="1.0" encoding="utf-8"?>
<style xmlns="http://purl.org/net/xbiblio/csl" class="note" version="1.0" demote-non-dropping-particle="sort-only">
  <info>
    <title>Chicago Manual of Style (full note, no Ibid.)</title>
    <id>http://www.zotero.org/styles/chicago-fullnote-bibliography-no-ibid</id>
    <link href="http://www.zotero.org/styles/chicago-fullnote-bibliography-no-ibid" rel="self"/>
    <link href="http://www.chicagomanualofstyle.org/tools_citationguide.html" rel="documentation"/>
    <author>
      <name>Julian Onions</name>
      <email>julian.onions@gmail.com</email>

wcaleb

#!/usr/bin/env python

from pandocfilters import toJSONFilter, RawInline, Space, Str, walk

"""
Pandoc filter for Markdown that converts most endnotes into
Pandoc's inline notes. If input notes had multiple paragraphs,
the paragraphs are joined by a space. But if an input note
had any blocks other than paragraphs, the note is left as is.
"""