lilywang1988

1. Install screen

sudo apt-get update
sudo apt-get install screen

2. Check the version

screen --version

lilywang1988

Install R, devtools, jags, rjags, eSIR , rstan, and Rstudio on Ubuntu 20.04.2

To install R, follow this to install R.

Follow this to install devtools.

Install jags and then rjags following

sudo apt-get install JAGS

lilywang1988

Git

Global Settings

• Related Setup: https://gist.github.com/hofmannsven/6814278
• Related Pro Tips: https://ochronus.com/git-tips-from-the-trenches/
• Interactive Beginners Tutorial: http://try.github.io/
• Git Cheatsheet by GitHub: https://services.github.com/on-demand/downloads/github-git-cheat-sheet/

Reminder

Press minus + shift + s and return to chop/fold long lines!

lilywang1988

Project Title

One Paragraph of project description goes here

Getting Started

These instructions will get you a copy of the project up and running on your local machine for development and testing purposes. See deployment for notes on how to deploy the project on a live system.

Prerequisites

lilywang1988

# Multiple plot function
#
# ggplot objects can be passed in ..., or to plotlist (as a list of ggplot objects)
# - cols:   Number of columns in layout
# - layout: A matrix specifying the layout. If present, 'cols' is ignored.
#
# If the layout is something like matrix(c(1,2,3,3), nrow=2, byrow=TRUE),
# then plot 1 will go in the upper left, 2 will go in the upper right, and
# 3 will go all the way across the bottom.
#

lilywang1988

from r cookbook, where bp is your ggplot:

Remove legend for a particular aesthetic (fill):

bp + guides(fill=FALSE) It can also be done when specifying the scale:

bp + scale_fill_discrete(guide=FALSE) This removes all legends:

lilywang1988

Example 1

rm(list=ls())
setwd("/Users/liliwang/Box/Cusum_simulation/restart3/For_paper/results/head_starts")
#date="20180311"
rho_list=seq(0,0.95,0.05)
mu_list=c(log(3),log(2),log(1.5),log(1.2),log(1),log(1),-log(1.2),-log(1.5),-log(2),-log(3)) #1-10
mu_list_str=c(paste0("log",c(3,2,1.5,1.2,1)),paste0("-log",c(1,1.2,1.5,2,3)))

data=NULL

lilywang1988

How to create List in Rcpp? 3 Ways!

1. Create the List directly and define the components

List res;
  res["beta1_scr"] = beta1_scr;
  res["beta2_scr"] = beta2_scr;
  res["beta1_inf"] = beta1_inf;
  res["beta2_inf"] = beta2_inf;
 res["r_scr"] = r_scr;

lilywang1988

Link

A brief introduction about Markdown (notes)

Headings

Heading 1

Heading 2

Heading 3

Texts

italic

lilywang1988

link

For two independent side-by-side figures, you can use two minipages inside a figure enviroment; for two subfigures, I would recommend the subcaption package with its subfigure environment; here's an example showing both approaches:

\documentclass{article}
  \usepackage[demo]{graphicx}
  \usepackage{caption}
  \usepackage{subcaption}