pansapiens

##
#  Update - no longer works. You need to also:
#  edit: /lib/systemd/system/docker.service
#  then run: sudo systemctl daemon-reload
#  see, https://medium.com/@ibrahimgunduz34/how-to-change-docker-data-folder-configuration-33d372669056
#
#  TODO: Fix this to use sed or similar to edit /lib/systemd/system/docker.service
##

# From: https://forums.docker.com/t/how-do-i-change-the-docker-image-installation-directory/1169

pansapiens

#!/bin/sh
set -e

if grep PRIVATE $1 >/dev/null; then
   echo "Use the public key ($1.pub), not the private one !"
   exit -1
fi

cat $1 | ssh $2 'umask 0077; mkdir -p .ssh; cat >> .ssh/authorized_keys && echo "Key $1 added to .ssh/authorized_keys on $2"'

pansapiens

#!/bin/bash

set -e
# Downloads the lastet release of Uniprot, putting it in a release-specific directory.
# Creates associated BLAST databases.

# We need makeblastdb on our PATH, somehow
# module load blast

# Better to use a stable DOWNLOAD_TMP name to support resuming downloads

pansapiens

from drf_openapi.views import SchemaView
from drf_openapi.entities import OpenApiSchemaGenerator
from rest_framework.renderers import CoreJSONRenderer
from drf_openapi.codec import OpenAPIRenderer, SwaggerUIRenderer

from rest_framework import response, permissions


class PublicOpenApiSchemaGenerator(OpenApiSchemaGenerator):
    """

pansapiens

import yaml
from rest_framework import status
from rest_framework_swagger.renderers import OpenAPIRenderer as _OpenAPIRenderer
from rest_framework.renderers import JSONRenderer
from openapi_codec import OpenAPICodec as _OpenAPICodec
from coreapi import Document
from drf_openapi.codec import _generate_openapi_object
from coreapi.compat import force_bytes
from collections import OrderedDict

pansapiens

# Build like: $ sudo singularity build --writable consexpression.simg Singularity
# Run like: $ singularity run --bind CONFIG_tool.txt:/consexpression/dao/CONFIG_tool.txt consexpression.simg

Bootstrap: docker
From: ubuntu:17.10

# Bootstrap: debootstrap
# OSVersion: xenial
# MirrorURL: http://au.archive.ubuntu.com/ubuntu/

pansapiens

pansapiens

Keybase proof

I hereby claim:

• I am pansapiens on github.
• I am pansapiens (https://keybase.io/pansapiens) on keybase.
• I have a public key ASADQ2rj-JVJbBwI3120kk1etbdVu-bi38W1gm8JKZ3R0go

To claim this, I am signing this object:

pansapiens

from typing import Dict, List
import csv
from rest_framework import status
from rest_framework.response import Response
from rest_framework.parsers import JSONParser, BaseParser
from rest_framework.views import APIView

class CSVTextParser(BaseParser):
    """
    A CSV parser for DRF APIViews.

pansapiens

#!/bin/bash
# A simple script for mounting NTFS disks on macOS

if [ $# -eq 0 ]; then
    diskutil list
    echo
    echo "No arguments provided."
    echo "Usage: mount-ntfs.sh [diskXsY]"
    echo "eg: mount-ntfs.sh disk2s2"
    echo