Pavel Sinitcyn pgsin

## getGenBankByTaxonomy.py
from Bio import Entrez
import os
import gzip

"""
To avoid problems with an access rate (ex. "HTTP Error 429: Too Many Requests")
Read how to get an api-key
https://ncbiinsights.ncbi.nlm.nih.gov/2017/11/02/new-api-keys-for-the-e-utilities/
"""
Entrez.api_key = '<your api key here>'

## Snakefile
import os
import re

GENOME = 'data/22'

rule all:
        input:  expand('output/reports/{SAMPLE}', SAMPLE=[os.path.splitext(i)[0] for i in os.listdir('input/') if not i.startswith('.') and i.endswith(".bam")])
        output: touch('output/done')

rule reference_index:

## MakeTable.cs
using System;
using System.Collections.Generic;
using System.IO;
using System.Linq;
using System.Text.RegularExpressions;

namespace ImmunopepModel
{
	public class Gene
	{

## TensorFlowPbTest.cs
using System;
using System.Collections.Generic;
using System.IO;
using System.Linq;
using System.Text;
using System.Threading.Tasks;
using TensorFlow;

namespace MachineLearning
{

## MappingProgram.cs
using System;
using System.Collections.Generic;
using System.IO;
using System.Net;
using System.Text;

public class MappingExample
{
	private const string UniprotServer = "https://www.uniprot.org/";

## MappingProgram.cs
using System;
using System.Collections.Generic;
using System.IO;
using System.Net;
using System.Text;

public class MappingExample
{
	private const string UniprotServer = "https://www.uniprot.org/";

## Combinations.cs
using System;

namespace CombinatoricsLib
{
    public class Combinations
    {
        private static ulong Factorial(int x, int until = 0)
        {
            ulong res = 1;
            while (x != until)

## CombinationBenchmark-report-github.md

      
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                pgsin
                / CombinationBenchmark-report-github.md
            
            
              Created May 24, 2018
            
              
                https://codereview.stackexchange.com/questions/194967/get-all-combinations-of-selecting-k-elements-from-an-n-sized-array/195025#195025
              
          
      View CombinationBenchmark-report-github.md
  
    
    BenchmarkDotNet=v0.10.14, OS=Windows 10.0.16299.371 (1709/FallCreatorsUpdate/Redstone3)
Intel Core i7-7820HQ CPU 2.90GHz (Kaby Lake), 1 CPU, 8 logical and 4 physical cores
Frequency=2835937 Hz, Resolution=352.6171 ns, Timer=TSC
  [Host]     : .NET Framework 4.7.1 (CLR 4.0.30319.42000), 32bit LegacyJIT-v4.7.2633.0
  Job-JWVBYN : .NET Framework 4.7.1 (CLR 4.0.30319.42000), 32bit LegacyJIT-v4.7.2633.0

Runtime=Clr  IsBaseline=True  

  
## polyA-SE.fa
>polyA_1
AAAAAAAAAAAAAAAAAAA

## commands.sh
ffmpeg -i input_video.mp4 -ss 00:00:30 -to 00:00:40 -c:v copy cropped.mp4
convert -depth 8 -resize 50% -background none plate.svg plate.png
ffmpeg -i cropped.mp4 -i plate.png -filter_complex "overlay=0:446:enable=between(t\,1\,9)" plated.mp4
ffmpeg -i plated.mp4 -vf drawtext="fontfile=Arial.ttf: text='Everything is empty, all lies, except this infinite sky': fontcolor=black: fontsize=12: x=200: y=476" result.mp4