Test report for easybuilders/easybuild-easyconfigs#1190
Build succeeded for 0 out of 0 (1 easyconfigs in this PR)
- start: Thu, 13 Nov 2014 16:11:59 +0000 (UTC)
- end: Thu, 13 Nov 2014 16:12:03 +0000 (UTC)
Robert Schmidt rjeschmi
rjeschmi
/ perl-md5-mmap
Last active
August 29, 2015 14:00
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| A much happier zpool | |
| I've udpated Archive::BagIt with an mmap optimization | |
| https://github.com/rjeschmi/Archive-BagIt/commit/da8ae0bfd1e0a82f704e29861aab8fbd79c9e6e8 | |
| pool alloc free read write read write | |
| -------------------------------------------- ----- ----- ----- ----- ----- ----- | |
| cihmz 39.4T 4.11T 6.62K 237 782M 1.19M |
rjeschmi
/ gist:8e4df38eea768d79daf4
Created
May 13, 2014 19:42
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| !! The ERROR '2006' was CLEARED by call to prepare method | |
| -> prepare for DBD::mysql::db (DBI::db=HASH(0x6275ae0)~0x6275c00 'select * from bags a left join (select path as b_path,repo_id as b_repo, md5 as b_md5 from bags where repo_id ='romano') as b on (a.path=b_path) where a.repo_id='paneer' and (b_repo is null or a.md5!=b_md5)') thr#12d7010 | |
| -> dbd_st_prepare MYSQL_VERSION_ID 50534, SQL statement: select * from bags a left join (select path as b_path,repo_id as b_repo, md5 as b_md5 from bags where repo_id ='romano') as b on (a.path=b_path) where a.repo_id='paneer' and (b_repo is null or a.md5!=b_md5) | |
| >- dbd_st_free_result_sets | |
| <- dbd_st_free_result_sets RC -1 | |
| <- dbd_st_free_result_sets | |
| >count_params statement select * from bags a left join (select path as b_path,repo_id as b_repo, md5 as b_md5 from bags where repo_id ='romano') as b on (a.path=b_path) where a.repo_id='paneer' and (b_repo is null or a.md5!=b_md5) | |
| <- dbd_st_prepare | |
| <- prepare= ( DBI::st=HASH( |
rjeschmi
/ gist:90e88244c5a61be54299
Created
September 19, 2014 14:04
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| OHRI-178319:www-bioinfo rob$ git pull origin master | |
| remote: Counting objects: 8, done. | |
| remote: Compressing objects: 100% (8/8), done. | |
| remote: Total 8 (delta 4), reused 0 (delta 0) | |
| Unpacking objects: 100% (8/8), done. | |
| From gitlab.com:ohri/www-bioinfo | |
| * branch master -> FETCH_HEAD | |
| * [new branch] master -> origin/master | |
| Auto-merging index.html | |
| CONFLICT (content): Merge conflict in index.html |
rjeschmi
/ gist:f4adeeb6a655a059c8de
Last active
August 29, 2015 14:07
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| [Tue Oct 07 01:24:47 GMT 2014] net.sf.picard.sam.FastqToSam FASTQ=unmapped_left.fastq.gz QUALITY_FORMAT=Standard OUTPUT=unmapped.bam SAMPLE_NAME=560Iplus-Ter119minus READ_GROUP_NAME=A SORT_ORDER=queryname MIN_Q=0 MAX_Q=93 VERBOSITY=INFO QUIET=false VALIDATION_STRINGENCY=STRICT COMPRESSION_LEVEL=5 MAX_RECORDS_IN_RAM=500000 CREATE_INDEX=false CREATE_MD5_FILE=false[Tue Oct 07 01:24:47 GMT 2014] Executing as rob@solexa10 on Linux 3.2.63-1.el5.elrepo amd64; Java HotSpot(TM) 64-Bit Server VM 1.6.0_23-b05; Picard version: 1.78(1278) | |
| [Tue Oct 07 01:24:47 GMT 2014] net.sf.picard.sam.FastqToSam FASTQ=unmapped_left.fastq.gz QUALITY_FORMAT=Standard OUTPUT=unmapped.bam SAMPLE_NAME=Null_Ter119+ READ_GROUP_NAME=A SORT_ORDER=queryname MIN_Q=0 MAX_Q=93 VERBOSITY=INFO QUIET=false VALIDATION_STRINGENCY=STRICT COMPRESSION_LEVEL=5 MAX_RECORDS_IN_RAM=500000 CREATE_INDEX=false CREATE_MD5_FILE=false | |
| [Tue Oct 07 01:24:47 GMT 2014] Executing as rob@solexa10 on Linux 3.2.63-1.el5.elrepo amd64; Java HotSpot(TM) 64-Bit Server VM |
rjeschmi
/ gist:5d1aabebeae3156bb131
Created
October 23, 2014 20:48
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| my $global | |
| $worker->run( sub { | |
| my $return_val = $_; | |
| $global->{'editthis'}=$return_val | |
| } ); | |
rjeschmi
/ easybuild_test_report_easyconfigs_pr1190_20141213-UTC-16-12-03.md
Created
November 13, 2014 16:12
EasyBuild test report for easyconfigs PR #1190
rjeschmi
/ TopHat-2.0.12-goolf-1.4.10_partial.log
Created
November 13, 2014 19:21
(partial) EasyBuild log for failed build of /tmp/easybuild-I_Pr0c/files_pr1186/TopHat-2.0.12-goolf-1.4.10.eb (PR #1186)
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| == 2014-11-13 19:21:58,004 main.ConfigureMake INFO This is EasyBuild 1.16.0dev (framework: 1.16.0dev, easyblocks: 1.16.0dev) on host crick. | |
| == 2014-11-13 19:21:58,004 main.ConfigureMake INFO This is easyblock ConfigureMake from module easybuild.easyblocks.generic.configuremake (/home/rob/scratch/eb-dev/easybuild-easyblocks/easybuild/easyblocks/generic/configuremake.pyc) | |
| == 2014-11-13 19:21:58,004 main.ConfigureMake INFO Build dir set to /home/rob/.local/easybuild/build/TopHat/2.0.12/goolf-1.4.10 | |
| == 2014-11-13 19:21:58,005 main.ConfigureMake INFO Install dir set to /home/rob/.local/easybuild/software/TopHat/2.0.12-goolf-1.4.10 | |
| == 2014-11-13 19:21:58,005 main.ConfigureMake INFO Init completed for application name TopHat version 2.0.12 | |
| == 2014-11-13 19:21:58,005 main.easyblock.<module> INFO Obtained application instance of for TopHat (easyblock: None) | |
| == 2014-11-13 19:21:58,006 main.ConfigureMake INFO building and installing TopHat/2.0.12-goolf-1.4.10... | |
| == 2014-11-13 19:21:58,006 main.ConfigureMake INFO fetchin |
rjeschmi
/ easybuild_test_report_easyconfigs_pr1186_20142113-UTC-19-21-59.md
Created
November 13, 2014 19:21
EasyBuild test report for easyconfigs PR #1186
Test report for easybuilders/easybuild-easyconfigs#1186
Build succeeded for 2 out of 3 (3 easyconfigs in this PR)
- SUCCESS Bowtie2-2.2.4-goolf-1.4.10.eb
- SUCCESS Bowtie-1.1.1-goolf-1.4.10.eb
- FAIL (build issue) TopHat-2.0.12-goolf-1.4.10.eb (partial log available at https://gist.github.com/26c28f40a7fa8bbfd174)
rjeschmi
/ easybuild_test_report_easyconfigs_pr1186_20142613-UTC-20-26-13.md
Created
November 13, 2014 20:26
EasyBuild test report for easyconfigs PR #1186
Test report for easybuilders/easybuild-easyconfigs#1186
Build succeeded for 6 out of 6 (3 easyconfigs in this PR)
- SUCCESS SAMtools-0.1.18-goolf-1.4.10.eb
- SUCCESS bzip2-1.0.6-goolf-1.4.10.eb
- SUCCESS libreadline-6.2-goolf-1.4.10.eb
- SUCCESS Python-2.7.3-goolf-1.4.10.eb
rjeschmi
/ FragGeneScan-1.19-foss-2014b_partial.log
Created
November 21, 2014 03:14
(partial) EasyBuild log for failed build of /tmp/easybuild-smrdID/tweaked_easyconfigs/FragGeneScan-1.19-foss-2014b.eb (PR #1198)
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| == 2014-11-21 03:14:11,560 main.MakeCp INFO This is EasyBuild 1.16.0dev (framework: 1.16.0dev, easyblocks: 1.16.0dev) on host crick. | |
| == 2014-11-21 03:14:11,561 main.MakeCp INFO This is easyblock MakeCp from module easybuild.easyblocks.generic.makecp (/home/rob/scratch/eb-dev/easybuild-easyblocks/easybuild/easyblocks/generic/makecp.pyc) | |
| == 2014-11-21 03:14:11,561 main.MakeCp INFO Build dir set to /home/rob/.local/easybuild/build/FragGeneScan/1.19/foss-2014b | |
| == 2014-11-21 03:14:11,562 main.MakeCp INFO Install dir set to /home/rob/.local/easybuild/software/FragGeneScan/1.19-foss-2014b | |
| == 2014-11-21 03:14:11,563 main.MakeCp INFO Init completed for application name FragGeneScan version 1.19 | |
| == 2014-11-21 03:14:11,563 main.easyblock.<module> INFO Obtained application instance of for FragGeneScan (easyblock: MakeCp) | |
| == 2014-11-21 03:14:11,564 main.MakeCp INFO building and installing FragGeneScan/1.19-foss-2014b... | |
| == 2014-11-21 03:14:11,565 main.MakeCp INFO fetching files... | |
| == 2014-11-21 03:14:11,565 main.MakeCp IN |
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