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[[0,0,230218,0,"NCBI:BK006935.2","chrI","chrI","chrI","SGD","chromosome", | |
{"Sublist": | |
[[1,0,801,-1,"SGD:S000028862","SGD:S000028862", | |
"Telomeric region on the left arm of Chromosome I", "TEL01L","TEL01L","Telomeric region on the left arm of Chromosome I; composed of an X element core sequence, X element combinatorial repeats, and a short terminal stretch of telomeric repeats","chrI","SGD", | |
[{"end":"801","name":"TEL01L_X_element","seq_id":"chrI","source":"SGD","start":"337","strand":"-","type":"X_element"}, | |
{"end":"336","name":"TEL01L_X_element_combinatorial_repeat","seq_id":"chrI","source":"SGD","start":"63","strand":"-","type":"X_element_combinatorial_repeat"}, | |
{"end":"62","name":"TEL01L_telomeric_repeat_1","seq_id":"chrI","source":"SGD","start":"1","strand":"-","type":"telomeric_repeat"}, | |
{"end":"801","id":"TEL01L_telomere","name":"TEL01L_telomere","seq_id":"chrI","source":"SGD","start":"1","strand":"-","type":"telomere"}], |
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### | |
Y34D9B.1b WormBase polypeptide 1 529 . . . ID=Y34D9B.1b;uniprot_id=Q9N532;wormbase_geneid=WBGene00003238;wormbase_genename=mig-1;wormbase_protein=CE24204 | |
Y34D9B.1b WormBase CDS 1 529 . . . ID=Y34D9B.1b_exon_boundaries;uniprot_id=Q9N532;wormbase_geneid=WBGene00003238;wormbase_genename=mig-1;wormbase_protein=CE24204 | |
Y34D9B.1b WormBase exon 1 43 . . . Parent=Y34D9B.1b_exon_boundaries | |
Y34D9B.1b WormBase exon 43 90 . . . Parent=Y34D9B.1b_exon_boundaries | |
Y34D9B.1b WormBase exon 91 161 . . . Parent=Y34D9B.1b_exon_boundaries | |
Y34D9B.1b WormBase exon 162 208 . . . Parent=Y34D9B.1b_exon_boundaries | |
Y34D9B.1b WormBase exon 209 239 . . . Parent=Y34D9B.1b_exon_boundaries | |
Y34D9B.1b WormBase exon 239 2 |
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(base) MacBook-Pro-6:tmp cain$ git clone https://github.com/scottcain/seqpanel.git | |
Cloning into 'seqpanel'... | |
remote: Enumerating objects: 709, done. | |
remote: Counting objects: 100% (106/106), done. | |
remote: Compressing objects: 100% (52/52), done. | |
remote: Total 709 (delta 59), reused 70 (delta 52), pack-reused 603 | |
Receiving objects: 100% (709/709), 2.09 MiB | 3.73 MiB/s, done. | |
Resolving deltas: 100% (402/402), done. | |
(base) MacBook-Pro-6:tmp cain$ cd seqpanel/lib | |
(base) MacBook-Pro-6:lib cain$ yarn |
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Delivered-To: cain.cshl@gmail.com | |
Received: by 2002:a17:906:b28f:b0:997:d052:1521 with SMTP id q15csp2320014ejz; | |
Thu, 20 Jul 2023 11:23:56 -0700 (PDT) | |
X-Received: by 2002:a17:906:2086:b0:992:387:44d1 with SMTP id 6-20020a170906208600b00992038744d1mr10559686ejq.7.1689877436292; | |
Thu, 20 Jul 2023 11:23:56 -0700 (PDT) | |
ARC-Seal: i=1; a=rsa-sha256; t=1689877436; cv=none; | |
d=google.com; s=arc-20160816; | |
b=IT7V4jo8D9BrWIAVXBS9We0z+BGfnrPNwjBoqiZUQe0KUxTjkN7if6q5bQaedXFv8t | |
rxFU3CAfCURBDoqPBHIhMyuYYqWNWN2q1kAIStYCfpQ1tE0mu7bIFI8jzhKF9ca+/FcH | |
vMDes1pKfi7sPAR9ZoRJq9XkcrmC+KP5pVK1Th2gmrjnoe2fGseoCtyu3+BNlYz36cKX |
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{ | |
"type": "SyntenyTrack", | |
"trackId": "c_elegans.c_brenneri.paf-1669841807246", | |
"name": "c_elegans.c_brenneri.paf", | |
"assemblyNames": [ | |
"c_elegans_PRJNA13758", | |
"c_brenneri_PRJNA20035" | |
], | |
"adapter": { | |
"type": "PAFAdapter", |
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<script src="https://unpkg.com/react@16/umd/react.development.js" crossorigin></script><script src="https://unpkg.com/react-dom@16/umd/react-dom.development.js" crossorigin></script><script src="https://unpkg.com/@jbrowse/react-linear-genome-view/dist/react-linear-genome-view.umd.development.js" crossorigin></script> | |
<p>We're using the JBrowse Linear Genome View!</p> | |
<div id="jbrowse2_linear_genome_view" width="500px">this is where the browser should be</div> | |
<script> | |
function create_jbrowse2() { | |
const { createElement } = React | |
const { render } = ReactDOM |
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//this exact JS works just fine at http://scottca.in/node/3 | |
// but at https://staging.wormbase.org/species/c_elegans/gene/WBGene00001340#09f6--10 | |
// the exact same JS (with an extra fetch to get the releaseVersion) nearly entirely | |
// works but does NOT offset the track labels--that is the only difference. | |
// | |
// Weird | |
<script src="https://unpkg.com/react@16/umd/react.development.js" crossorigin></script><script src="https://unpkg.com/react-dom@16/umd/react-dom.development.js" crossorigin></script><script src="https://unpkg.com/@jbrowse/react-linear-genome-view/dist/react-linear-genome-view.umd.development.js" crossorigin></script> | |
function create_jbrowse2() { |
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{ | |
"exports" : { | |
"c_elegans_PRJNA13758_assembly" : "./c_elegans_PRJNA13758_assembly.js" | |
} | |
} |
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.... lots of stuff that looks ok ... | |
^[[32mwebpack_1 |^[[0m verbose 574.985439042 Removing extraneous file "/home/node/client/node_modules/write/node_modules/.bin". | |
^[[32mwebpack_1 |^[[0m [4/4] Building fresh packages... | |
^[[32mwebpack_1 |^[[0m verbose 577.406487021 ^[[35m^[[1mLove JSS? You can now support us on open collective:^[[22m^[[39m | |
^[[32mwebpack_1 |^[[0m > ^[[34mhttps://opencollective.com/jss/donate^[[0m | |
^[[32mwebpack_1 |^[[0m verbose 578.906366582 Thank you for using core-js ( https://github.com/zloirock/core-js ) for polyfilling JavaScript standard library! | |
^[[32mwebpack_1 |^[[0m | |
^[[32mwebpack_1 |^[[0m The project needs your help! Please consider supporting of core-js on Open Collective or Patreon: | |
^[[32mwebpack_1 |^[[0m > https://opencollective.com/core-js | |
^[[32mwebpack_1 |^[[0m > https://www.patreon.com/zloirock |
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{ | |
"label" : "SpCas9 NGG PAM sites", | |
"unsafeMouseover" : true, | |
"unsafePopup" : true, | |
"type":"CanvasFeatures", | |
"category" : "CRISPR_Cas9 sgRNA predictions", | |
"key" : "SpCas9 NGG PAM sites", | |
"style" : { | |
"color" : "RebeccaPurple", | |
"height" : 5 |
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