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Thoroughly Caffeinated

Nick Semenkovich semenko

Thoroughly Caffeinated
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@pgm
pgm / correlation_from_csv.py
Created September 22, 2020 02:30
Script based on code from the DepMap portal code to compute the top N pearson correlations and write to a CSV file
import argparse
import sqlite3
import sys
import numpy as np
import pandas as pd
def main():
parser = argparse.ArgumentParser()
parser.add_argument("in_csv_0")
@semenko
semenko / dmidecode
Last active October 26, 2021 02:57
Dell XPS 13 2015 model 9343 on Ubuntu 15.04, dmidecode, lsusb, lspci
$ sudo dmidecode
# dmidecode 2.12
# SMBIOS entry point at 0x000f0000
SMBIOS 2.8 present.
<SNIP>
Handle 0x0000, DMI type 0, 24 bytes
BIOS Information
@stephenturner
stephenturner / deseq2-analysis-template.R
Created July 30, 2014 12:20
Template for analysis with DESeq2
## RNA-seq analysis with DESeq2
## Stephen Turner, @genetics_blog
# RNA-seq data from GSE52202
# http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=gse52202. All patients with
# ALS, 4 with C9 expansion ("exp"), 4 controls without expansion ("ctl")
# Import & pre-process ----------------------------------------------------
# Import data from featureCounts
@plentz
plentz / nginx.conf
Last active March 10, 2024 12:03
Best nginx configuration for improved security(and performance)
# to generate your dhparam.pem file, run in the terminal
openssl dhparam -out /etc/nginx/ssl/dhparam.pem 2048
@cowboy
cowboy / github_post_recieve.php
Created October 11, 2010 02:04
GitHub PHP webhook to auto-pull on repo push
<?php
// Use in the "Post-Receive URLs" section of your GitHub repo.
if ( $_POST['payload'] ) {
shell_exec( 'cd /srv/www/git-repo/ && git reset --hard HEAD && git pull' );
}
?>hi