Minho Shin shinneuro

## gist:59e785a315d813d14cd0258b89a2fcac
#!/bin/bash
# =============================================================================
# @file    GitHub gist
# @brief   stop Adobe Creative Cloud app from auto-launching on login on macOS
# @author  Michael Hucka <mhucka@caltech.edu>
# @created 2021-08-12
# @website https://gist.github.com/mhucka/59e785a315d813d14cd0258b89a2fcac
#
# I find Adobe Creative Cloud absolutely infuriating.  It installs auto
# launchers that are not in the user's login app list, and the services are

## BIDS_to_datalad.sh
#!/bin/bash
# in study dir:

# Create superdataset
datalad create -c text2git --force

for i in `ls -d sub-*`; do
    if [ ! -d "${i}/.git" ]; then
       	# Create and register the subdataset
        datalad create -c text2git --force -d . $i

## baseof.html
<!-- Wherever your head tag is located, add the new partial -->

<head>
  {{ partial "google-fonts" . }}
</head>

## ds-project-organization.md

      
              1 file
            
          
              54 forks
            
          
                51 comments
              
            
              335 stars
            
          
                ericmjl
                / ds-project-organization.md
            
            
              Last active
              October 9, 2025 19:02
            
              
                How to organize your Python data science project
              
          
    UPDATE: I have baked the ideas in this file inside a Python CLI tool called pyds-cli. Please find it here: https://github.com/ericmjl/pyds-cli
How to organize your Python data science project

Having done a number of data projects over the years, and having seen a number of them up on GitHub, I've come to see that there's a wide range in terms of how "readable" a project is. I'd like to share some practices that I have come to adopt in my projects, which I hope will bring some organization to your projects.
Disclaimer: I'm hoping nobody takes this to be "the definitive guide" to organizing a data project; rather, I hope you, the reader, find useful tips that you can adapt to your own projects.
Disclaimer 2: What I’m writing below is primarily geared towards Python language users. Some ideas may be transferable to other languages; others may not be so. Please feel free to remix whatever you see here!

  
## knitr_defaults.R
# My preferred defaults (may be changed in individual chunks)
opts_chunk$set(tidy=FALSE, warning=FALSE, message=FALSE, cache=TRUE,
               comment=NA, verbose=TRUE, fig.width=6, fig.height=4)

# Name the cache path and fig.path based on filename...
opts_chunk$set(fig.path = paste("figure/",
                                gsub(".Rmd", "", knitr:::knit_concord$get('infile')),
                                "-", sep=""),
               cache.path = paste(gsub(".Rmd", "", knitr:::knit_concord$get('infile') ),
                                "/", sep=""))
	#!/bin/bash
	# =============================================================================
	# @file GitHub gist
	# @brief stop Adobe Creative Cloud app from auto-launching on login on macOS
	# @author Michael Hucka <mhucka@caltech.edu>
	# @created 2021-08-12
	# @website https://gist.github.com/mhucka/59e785a315d813d14cd0258b89a2fcac
	#
	# I find Adobe Creative Cloud absolutely infuriating. It installs auto
	# launchers that are not in the user's login app list, and the services are
	#!/bin/bash
	# in study dir:

	# Create superdataset
	datalad create -c text2git --force

	for i in `ls -d sub-*`; do
	if [ ! -d "${i}/.git" ]; then
	# Create and register the subdataset
	datalad create -c text2git --force -d . $i
	<!-- Wherever your head tag is located, add the new partial -->

	<head>
	{{ partial "google-fonts" . }}
	</head>
	# My preferred defaults (may be changed in individual chunks)
	opts_chunk$set(tidy=FALSE, warning=FALSE, message=FALSE, cache=TRUE,
	comment=NA, verbose=TRUE, fig.width=6, fig.height=4)

	# Name the cache path and fig.path based on filename...
	opts_chunk$set(fig.path = paste("figure/",
	gsub(".Rmd", "", knitr:::knit_concord$get('infile')),
	"-", sep=""),
	cache.path = paste(gsub(".Rmd", "", knitr:::knit_concord$get('infile') ),
	"/", sep=""))