jfaganUK

#' ## Storing R Objects in a SQLite Database

#' Two packages we are using. The first is the ```RSQLite``` which will be used to create and manage an in-memory SQLite database. The second is ```igraph``` which I will use to create and visualize a random network. Some of the work I do is on network simulation. I often don't know the metrics I need from a simulated network when it's created, so I want to be able to store the networks that are created so that I can go back later and analyze them.
library(RSQLite)
library(igraph)

#' Create a database in memory.
con <- dbConnect(SQLite(), ":memory:")

#' The table has two columns, an *id* column and a column called *graph* which is a **blob** type. This type just stores binary data.

LeCoupa

#!/bin/bash
#####################################################
# Name: Bash CheatSheet for Mac OSX
# 
# A little overlook of the Bash basics
#
# Usage:
#
# Author: J. Le Coupanec
# Date: 2014/11/04

bsweger

Useful Pandas Snippets

A personal diary of DataFrame munging over the years.

Data Types and Conversion

Convert Series datatype to numeric (will error if column has non-numeric values)
(h/t @makmanalp)

stephenturner

# Download the data from github (click the "raw" button, save as a text file called "results.txt").
# https://gist.github.com/stephenturner/806e31fce55a8b7175af
res <- read.table("results.txt", header=TRUE)
head(res)

# Make a basic volcano plot
with(res, plot(log2FoldChange, -log10(pvalue), pch=20, main="Volcano plot", xlim=c(-2.5,2)))

# Add colored points: red if padj<0.05, orange of log2FC>1, green if both)
with(subset(res, padj<.05 ), points(log2FoldChange, -log10(pvalue), pch=20, col="red"))

igordot

We couldn’t find that file to show.

adaugherity

#!/usr/bin/ruby
# Create display override file to force Mac OS X to use RGB mode for Display
# see http://embdev.net/topic/284710

require 'base64'

data=`ioreg -l -d0 -w 0 -r -c AppleDisplay`

edids=data.scan(/IODisplayEDID.*?<([a-z0-9]+)>/i).flatten
vendorids=data.scan(/DisplayVendorID.*?([0-9]+)/i).flatten

pcbulai

# .bashrc

# Source global definitions
if [ -f /etc/bashrc ]; then
	. /etc/bashrc
fi

# User specific aliases and functions

### autocorrects cd misspellings, 'cd /sur/src/linus' >> 'cd /usr/src/linux' ###

dan-blanchard

I recently needed a way to run unit tests on Travis for a project that uses Sun Grid Engine, Grid Map. Unfortunately, it seemed like no one had figured out how to set that up on Travis before (or simply create a single-machine installation without any user interaction). After hours of trial-and-error, I now know the secrets to making a single-machine installation of SGE that runs on Travis, and I'm sharing my script to prevent other people from going through the same frustrating experience.

To use the install_sge.sh script below, you just need to copy all of the files in this gist to a travis sub-directory directly under the root of your GitHub project, and add the following lines to your .travis.yml

before_install:
  - travis/install_sge.sh
  - export SGE_ROOT=/var/lib/gridengine
  - export SGE_CELL=default
  - export DRMAA_LIBRARY_PATH=/usr/lib/libdrmaa.so.1.0

mawaldne

def line  
new File("test.txt").withReader { line = it.readLine() }  
println line  

Glench

"""
We want to run a function asychronously and run a
callback function with multiple parameters when it
returns!

In this example, we are pretending we're analyzing
the names and ages of some people. We want to print
out:

jack 0