Vivekanandan (Vivek) Balasubramanian vivek-bala
vivek-bala
/ gromacs_check_on_archer.py
Created
September 12, 2014 15:38
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| import sys | |
| import radical.pilot as rp | |
| #------------------------------------------------------------------------------ | |
| # | |
| def pilot_state_cb (pilot, state) : | |
| """ this callback is invoked on all pilot state changes """ | |
| print "[Callback]: ComputePilot '%s' state: %s." % (pilot.uid, state) |
vivek-bala
/ cython_numpy_stampede.txt
Created
October 4, 2014 13:50
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| Processing dependencies for Cython==0.20.2 | |
| Finished processing dependencies for Cython==0.20.2 | |
| login3.stampede(22)$ cd .. | |
| login3.stampede(23)$ cd numpy/ | |
| login3.stampede(24)$ python setup.py install --user | |
| Running from numpy source directory. | |
| Cythonizing sources | |
| numpy/random/mtrand/mtrand.pyx has not changed | |
| /opt/apps/python/epd/7.3.2/lib/python2.7/distutils/dist.py:267: UserWarning: Unknown distribution option: 'test_suite' | |
| warnings.warn(msg) |
vivek-bala
/ mkfile.py
Created
October 10, 2014 01:05
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| #!/usr/bin/env python | |
| """A kernel that creates a new ASCII file with a given size and name. | |
| """ | |
| __author__ = "Ole Weider <ole.weidner@rutgers.edu>" | |
| __copyright__ = "Copyright 2014, http://radical.rutgers.edu" | |
| __license__ = "MIT" | |
| from copy import deepcopy |
vivek-bala
/ connection_tests_output
Created
October 13, 2014 19:39
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| python connection_drops.py | |
| 2014:10:13 12:42:49 radical.pilot.MainProcess: [INFO ] radical.pilot version: 0.20 (v0.20-167-g0a3a8ec@(detached) | |
| 2014:10:13 12:42:49 5226 MainThread saga : [INFO ] saga-python version: 0.20 | |
| 2014:10:13 12:42:49 5226 MainThread radical.utils : [DEBUG ] lm new manager | |
| 2014:10:13 12:42:49 5226 MainThread saga.Engine : [INFO ] Loading adaptor saga.adaptors.context.myproxy | |
| 2014:10:13 12:42:49 5226 MainThread saga.Engine : [INFO ] Register adaptor saga.adaptors.context.myproxy for saga.Context API with URL scheme(s) ['myproxy://'] | |
| 2014:10:13 12:42:49 5226 MainThread saga.Engine : [INFO ] Loading adaptor saga.adaptors.context.x509 | |
| 2014:10:13 12:42:49 5226 MainThread saga.Engine : [INFO ] Register adaptor saga.adaptors.context.x509 for saga.Context API with URL scheme(s) ['x509://'] | |
| 2014:10:13 12:42:49 5226 MainThread saga.Engine : [INFO ] Loading adaptor sag |
vivek-bala
/ endpart_connection_tests
Created
October 13, 2014 20:23
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| 2014:10:13 15:35:11 5226 InputFileTransferWorker-2 saga.ShellDirectory : [DEBUG ] read : [ 14] [ 10] (PROMPT-0->) | |
| 2014:10:13 15:35:11 5226 InputFileTransferWorker-2 saga.ShellFile : [INFO ] file initialized (0)() | |
| 2014:10:13 15:35:11 5226 InputFileTransferWorker-2 radical.utils : [DEBUG ] lm check pool (['sftp://login.archer.ac.uk/shell_file_adaptor_command_shell', 'fork://localhost/shell_file_adaptor_command_shell', 'file://localhost/shell_file_adaptor_command_shell']) | |
| 2014:10:13 15:35:11 5226 InputFileTransferWorker-2 radical.utils : [DEBUG ] lm lease object for fork://localhost/shell_file_adaptor_command_shell (4) | |
| 2014:10:13 15:35:11 5226 InputFileTransferWorker-2 radical.utils : [DEBUG ] lm lease object <radical.utils.lease_manager._LeaseObject object at 0x7ffdd311f2d0> use: ok! | |
| 2014:10:13 15:35:11 5226 InputFileTransferWorker-2 radical.utils : [ERROR ] lo.0002 was unused for 0.5s | |
| 2014:10:13 15:35:11 5226 InputFileTransferWork |
vivek-bala
/ extasy_stampede
Created
October 15, 2014 13:42
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| cat extasy.log | |
| 2014:10:15 09:13:41 radical.pilot.MainProcess: [INFO ] radical.pilot version: 0.20 (v0.20-167-g0a3a8ec@(detached) | |
| 2014:10:15 09:13:41 24250 MainThread saga : [INFO ] saga-python version: 0.20 | |
| 2014:10:15 09:13:41 24250 MainThread radical.utils : [DEBUG ] lm new manager | |
| 2014:10:15 09:13:41 24250 MainThread saga.Engine : [INFO ] Loading adaptor saga.adaptors.context.myproxy | |
| 2014:10:15 09:13:41 24250 MainThread saga.Engine : [INFO ] Register adaptor saga.adaptors.context.myproxy for saga.Context API with URL scheme(s) ['myproxy://'] | |
| 2014:10:15 09:13:41 24250 MainThread saga.Engine : [INFO ] Loading adaptor saga.adaptors.context.x509 | |
| 2014:10:15 09:13:41 24250 MainThread saga.Engine : [INFO ] Register adaptor saga.adaptors.context.x509 for saga.Context API with URL scheme(s) ['x509://'] | |
| 2014:10:15 09:13:41 24250 MainThread saga.Engine : [INFO ] Loading adaptor saga.adaptors. |
vivek-bala
/ extasy_coco_amber_archer
Last active
August 29, 2015 14:07
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| cat extasy.log | |
| 2014:10:15 09:43:18 radical.pilot.MainProcess: [INFO ] radical.pilot version: 0.20 (v0.20-167-g0a3a8ec@(detached) | |
| 2014:10:15 09:43:18 24873 MainThread saga : [INFO ] saga-python version: 0.20 | |
| 2014:10:15 09:43:18 24873 MainThread radical.utils : [DEBUG ] lm new manager | |
| 2014:10:15 09:43:18 24873 MainThread saga.Engine : [INFO ] Loading adaptor saga.adaptors.context.myproxy | |
| 2014:10:15 09:43:18 24873 MainThread saga.Engine : [INFO ] Register adaptor saga.adaptors.context.myproxy for saga.Context API with URL scheme(s) ['myproxy://'] | |
| 2014:10:15 09:43:18 24873 MainThread saga.Engine : [INFO ] Loading adaptor saga.adaptors.context.x509 | |
| 2014:10:15 09:43:18 24873 MainThread saga.Engine : [INFO ] Register adaptor saga.adaptors.context.x509 for saga.Context API with URL scheme(s) ['x509://'] | |
| 2014:10:15 09:43:18 24873 MainThread saga.Engine : [INFO ] Loading adaptor saga.adaptors.c |
vivek-bala
/ archer_lsdmap_test
Last active
August 29, 2015 14:08
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| #!/bin/bash --login | |
| # PBS job options (name, compute nodes, job time) | |
| #PBS -N Example_MPI_Job | |
| #PBS -l select=1 | |
| #PBS -l walltime=00:10:00 | |
| # Replace [budget code] below with your project code (e.g. t01) | |
| #PBS -A e290 |
vivek-bala
/ archer_lsdmap_error
Created
October 29, 2014 15:07
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| File "/var/opt/cray/alps/spool/11744193/lsdmap", line 5, in <module> | |
| File "/var/opt/cray/alps/spool/11744193/lsdmap", line 5, in <module> | |
| lsdm.LSDMap().run() | |
| lsdm.LSDMap().run() | |
| File "/work/y07/y07/cse/python/2.7.6/lib/python2.7/site-packages/lsdmap/lsdm.py", line 311, in run | |
| File "/work/y07/y07/cse/python/2.7.6/lib/python2.7/site-packages/lsdmap/lsdm.py", line 311, in run | |
| self.initialize(comm, config, args) | |
| File "/work/y07/y07/cse/python/2.7.6/lib/python2.7/site-packages/lsdmap/lsdm.py", line 48, in initialize | |
| self.initialize(comm, config, args) | |
| File "/work/y07/y07/cse/python/2.7.6/lib/python2.7/site-packages/lsdmap/lsdm.py", line 48, in initialize |
vivek-bala
/ bin_echo_log
Created
November 4, 2014 02:22
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| [Callback]: ComputeUnit '54581fae20a6412c9596ceed' state changed to PendingExecution at 2014-11-04 00:37:07.943486. | |
| [Callback]: ComputeUnit '54581fb020a6412c9596cf00' state changed to PendingExecution at 2014-11-04 00:37:07.951016. | |
| [Callback]: ComputeUnit '54581fad20a6412c9596cee9' state changed to PendingExecution at 2014-11-04 00:37:07.955083. | |
| [Callback]: ComputeUnit '54581faf20a6412c9596cef7' state changed to PendingExecution at 2014-11-04 00:37:07.955830. | |
| [Callback]: ComputeUnit '54581fb020a6412c9596cefa' state changed to PendingExecution at 2014-11-04 00:37:07.965172. | |
| [Callback]: ComputeUnit '54581fad20a6412c9596cee8' state changed to PendingExecution at 2014-11-04 00:37:08.012034. | |
| [Callback]: ComputeUnit '54581faf20a6412c9596cef2' state changed to PendingExecution at 2014-11-04 00:37:08.013545. | |
| [Callback]: ComputeUnit '54581fb120a6412c9596cf04' state changed to PendingExecution at 2014-11-04 00:37:08.016008. | |
| [Callback]: ComputeUnit '54581fb120a6412c9596cf02' state changed to PendingExecution at 2014-11- |
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