xie186

#!/usr/bin/perl -w
use strict;

my ($DMR, $out) = @ARGV;

open DMR, $DMR or die "File not found: $!";
open OUT, "+>$out" or die "$!";

#read  a  line,
# go to next line

pratos

# For Windows users# Note: <> denotes changes to be made

#Create a conda environment
conda create --name <environment-name> python=<version:2.7/3.5>

#To create a requirements.txt file:
conda list #Gives you list of packages used for the environment

conda list -e > requirements.txt #Save all the info about packages to your folder

kived

import kivy
kivy.require('1.8.1')

from kivy.app import App
from kivy.lang import Builder

root = Builder.load_string('''
BoxLayout:
    orientation: 'vertical'
    Splitter:

barrysteyn

Migrating From SVN to Git

This gist details the following:

1. Converting a Subversion (SVN) repository into a Git repository
2. Purging the resultant Git repository of large files

Migrating from SVN to Git is roughly split into three steps:

1. Retrieve a list of SVN commit usernames

nathanhaigh

#!/bin/bash
# Usage: deinterleave_fastq.sh < interleaved.fastq f.fastq r.fastq [compress]
# 
# Deinterleaves a FASTQ file of paired reads into two FASTQ
# files specified on the command line. Optionally GZip compresses the output
# FASTQ files using pigz if the 3rd command line argument is the word "compress"
# 
# Can deinterleave 100 million paired reads (200 million total
# reads; a 43Gbyte file), in memory (/dev/shm), in 4m15s (255s)
# 

netj

#!/usr/bin/env bash
# memusg -- Measure memory usage of processes
# Usage: memusg COMMAND [ARGS]...
#
# Author: Jaeho Shin <netj@sparcs.org>
# Created: 2010-08-16
############################################################################
# Copyright 2010 Jaeho Shin.                                               #
#                                                                          #
# Licensed under the Apache License, Version 2.0 (the "License");          #