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Genevieve Buckley GenevieveBuckley

  • Monash University
  • Melbourne
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View distributed-skeleton-analysis.ipynb
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# Proposed slices_from_chunks_overlap function
# Mofified from slices_from_chunks from dask.array.core
from itertools import product
from dask.array.slicing import cached_cumsum
def slices_from_chunks_overlap(chunks, depth=1):
"""Translate chunks tuple to a set of slices in product order
depth : int
GenevieveBuckley / install_cupy_9.0.0b3.txt
Created Mar 15, 2021
How to install the beta version of Cupy 9.0.0
View install_cupy_9.0.0b3.txt
conda install -c conda-forge/label/cupy_rc cudatoolkit=11.2 cupy=9.0.0b3
GenevieveBuckley / cellprofiler-environment-dev-ubuntu-20-04.yml
Created Feb 11, 2021
CellProfiler development conda environment export
View cellprofiler-environment-dev-ubuntu-20-04.yml
name: cellprofiler-dev
- conda-forge
- defaults
- _libgcc_mutex=0.1=conda_forge
- _openmp_mutex=4.5=1_gnu
- alsa-lib=1.2.3=h516909a_0
- atk-1.0=2.36.0=h3371d22_4
- brotlipy=0.7.0=py38h497a2fe_1001
GenevieveBuckley /
Last active Feb 11, 2021
CellProfiler development installation on Ubuntu 20.04

CellProfiler development installation on Ubuntu 20.04

Guide created February 2021

1. Install dependencies

Install these dependencies

sudo apt update
sudo apt -y upgrade
sudo apt install -y make gcc build-essential libgtk-3-dev
sudo apt-get install -y python3-pip openjdk-11-jdk-headless default-libmysqlclient-dev libnotify-dev libsdl2-dev
GenevieveBuckley / restart-and-run-all.ipynb
Created Nov 10, 2020
Jupyter notebook restart and run all
View restart-and-run-all.ipynb
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GenevieveBuckley / example-images.txt
Last active Oct 8, 2020
worm demo for napari affine transforms
View example-images.txt
Example images used can be downloaded from here:
#!/usr/bin/env python3
quicky script that compares two conda environments
can be handy for debugging differences between two environments
This could be made much cleaner and more flexible -- but it does the job.
Please let me know if you extend or improve it.
GenevieveBuckley / pip_install
Created Sep 28, 2020 — forked from chrisRedwine/pip_install
Pip install a specific github repo tag or branch
View pip_install
# From
pip install -e git://{ username }/{ reponame }.git@{ tag name }#egg={ desired egg name }
GenevieveBuckley / pyconlineau-beeware-briefcase-android
Created Sep 6, 2020
Notes from pyconline 2020 beeware sprints - briefcase on android
View pyconlineau-beeware-briefcase-android
briefcase android project
phone MUST be in file transfer mode
Must wait for the computer to recognise that the phone has been plugged in
Must allow USB debugging
Traceback (most recent call last):
File "/home/xero/.virtualenvs/beeware-venv/bin/briefcase", line 8, in <module>