| import os | |
| import numpy as np | |
| from fibsem_tools import io | |
| from skimage.io import imsave | |
| from scipy.ndimage import zoom | |
| datasets = [ | |
| 'jrc_hela-2', | |
| 'jrc_hela-3', | |
| 'jrc_jurkat-1', |
| # Average-Downsampling example in OpenCL (via gputools) | |
| # please install it first via | |
| # pip install gputools | |
| import numpy as np | |
| from gputools import OCLProgram, OCLArray, get_device | |
| from timeit import default_timer | |
| from skimage.transform import downscale_local_mean | |
| # opencl kernel |
| """ first try at cellpose plugin for napari""" | |
| from enum import Enum | |
| import sys, pathlib | |
| import numpy as np | |
| import napari | |
| from napari import Viewer, gui_qt | |
| from napari.layers import Image | |
| from napari.qt.threading import thread_worker | |
| from napari_plugin_engine import napari_hook_implementation | |
| from magicgui import magicgui, magic_factory |
| #!/usr/bin/env python | |
| """ | |
| Affine transformation for dask arrays: Wrapper around `ndimage.affine_transform` | |
| """ | |
| __author__ = "Marvin Albert" | |
| __email__ = "marvin.albert@gmail.com" | |
| #!/usr/bin/env python3 | |
| """ | |
| quicky script that compares two conda environments | |
| can be handy for debugging differences between two environments | |
| This could be made much cleaner and more flexible -- but it does the job. | |
| Please let me know if you extend or improve it. |
| //ImageJ macro making a tilted movie out of stack | |
| //uses shear transform + rotation | |
| //Eugene Katrukha katpyxa at gmail.com | |
| requires("1.48h"); | |
| sTitle=getTitle(); | |
| sMovieTitle=sTitle+"_tilt_movie"; | |
| setBatchMode(true); | |
| //Dialog |
