Skip to content

Instantly share code, notes, and snippets.

Genevieve Buckley GenevieveBuckley

  • Monash University
  • Melbourne
View GitHub Profile
ekatrukha / 3D_tilt_stack_v1.ijm
Created Feb 7, 2019
ImageJ macro making a tilted movie out of Z-stack
View 3D_tilt_stack_v1.ijm
//ImageJ macro making a tilted movie out of stack
//uses shear transform + rotation
//Eugene Katrukha katpyxa at
import pandas as pd
import os
import re
from sklearn.decomposition import PCA
from microscopium import io
from microscopium.preprocess import montage_stream
from microscopium.preprocess import correct_multiimage_illumination
from microscopium.preprocess import find_background_illumination
import bokeh
from import output_notebook, push_notebook
import numpy as np
from ipywidgets import interact, widgets
from bokeh.plotting import figure, show
althonos / setup.cfg
Last active Apr 16, 2019
A `setup.cfg` template for my Python projects
View setup.cfg
name = {name}
version = {version}
author = Martin Larralde
author-email =
home-page ={name}
description = {description}
long-description = file: README.rst, CHANGELOG.rst
charlesreid1 / imread
Created Nov 9, 2017
Results from using different imread() functions
View imread
In [1]: from import imread as skimage_imread
In [2]: from matplotlib.pyplot import imread as plt_imread
In [3]: from scipy.ndimage import imread as scipy_imread
In [4]: skimage_imread('bulk_water_000.png')
array([[[146, 125, 54, 255],
[146, 125, 54, 255],
pierrejoubert73 /
Last active Apr 11, 2019
How to add a collapsible section in markdown.

A collapsible section with markdown

Click to expand!


  1. A numbered
  2. list
    • With some
    • Sub bullets
dela3499 /
Created May 18, 2017
Bokeh scatterplot with tooltips in the Jupyter notebook
from bokeh.plotting import figure, output_file, show, ColumnDataSource
from bokeh.models import HoverTool
from import output_notebook
source = ColumnDataSource(
x=[1, 2, 3, 4, 5],
y=[2, 5, 8, 2, 7],
desc=['A', 'b', 'C', 'd', 'E'],
aplavin /
Created Aug 20, 2016
ipywidgets extensions
import ipywidgets as iw
import traitlets
class SelectionSliderBtns(iw.Box):
description = traitlets.Unicode()
value = traitlets.Any()
options = traitlets.Union([traitlets.List(), traitlets.Dict()])
def __init__(self, **kwargs):
from bokeh.plotting import figure, ColumnDataSource
from bokeh.models import HoverTool
def scatter_with_hover(df, x, y,
fig=None, cols=None, name=None, marker='x',
fig_width=500, fig_height=500, **kwargs):
Plots an interactive scatter plot of `x` vs `y` using bokeh, with automatic
tooltips showing columns from `df`.
diyan /
Last active Apr 9, 2019
Desktop GUI automation in Python


UI Automation. Desktop. Python

GUI toolkit agnostic

autopy - simple, cross-platform GUI automation toolkit. MIT -

  • 432 stars, 102 forks, 2950 monthly downloads at 2015-05-13
  • GUI toolkit agnostic
You can’t perform that action at this time.