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  • Monash University
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ekatrukha / 3D_tilt_stack_v1.ijm
Created Feb 7, 2019
ImageJ macro making a tilted movie out of Z-stack
View 3D_tilt_stack_v1.ijm
//ImageJ macro making a tilted movie out of stack
//uses shear transform + rotation
//Eugene Katrukha katpyxa at
import pandas as pd
import os
import re
from sklearn.decomposition import PCA
from microscopium import io
from microscopium.preprocess import montage_stream
from microscopium.preprocess import correct_multiimage_illumination
from microscopium.preprocess import find_background_illumination
acbetter /
Last active Jun 13, 2019
Image Viewer Example by PyQt5 and Python 3
# -*- coding: utf-8 -*-
from PyQt5.QtCore import Qt
from PyQt5.QtGui import QImage, QPixmap, QPalette, QPainter
from PyQt5.QtPrintSupport import QPrintDialog, QPrinter
from PyQt5.QtWidgets import QLabel, QSizePolicy, QScrollArea, QMessageBox, QMainWindow, QMenu, QAction, \
qApp, QFileDialog
import bokeh
from import output_notebook, push_notebook
import numpy as np
from ipywidgets import interact, widgets
from bokeh.plotting import figure, show
althonos / setup.cfg
Last active Jun 7, 2019
A `setup.cfg` template for my Python projects
View setup.cfg
name = {name}
version = {version}
author = Martin Larralde
author-email =
home-page ={name}
description = {description}
long-description = file: README.rst, CHANGELOG.rst
kb1lqc /
Created Feb 12, 2018
Unit Testing Serial Ports | Serial Port Unit Tests
import pytest
import sliplib
import string
from faradayio import faraday
from tests.serialtestclass import SerialTestClass
def test_socketOne():
"""Simple test to make sure loopback serial port created successfully"""
charlesreid1 / imread
Created Nov 9, 2017
Results from using different imread() functions
View imread
In [1]: from import imread as skimage_imread
In [2]: from matplotlib.pyplot import imread as plt_imread
In [3]: from scipy.ndimage import imread as scipy_imread
In [4]: skimage_imread('bulk_water_000.png')
array([[[146, 125, 54, 255],
[146, 125, 54, 255],
andreasonny83 / .gitignore
Last active Jun 14, 2019
Gitignore template for JavaScript projects
View .gitignore
# See for more about ignoring files.
# compiled output
# Runtime data
pierrejoubert73 /
Last active Jun 8, 2019
How to add a collapsible section in markdown.

A collapsible section with markdown

Click to expand!


  1. A numbered
  2. list
    • With some
    • Sub bullets
dela3499 /
Created May 18, 2017
Bokeh scatterplot with tooltips in the Jupyter notebook
from bokeh.plotting import figure, output_file, show, ColumnDataSource
from bokeh.models import HoverTool
from import output_notebook
source = ColumnDataSource(
x=[1, 2, 3, 4, 5],
y=[2, 5, 8, 2, 7],
desc=['A', 'b', 'C', 'd', 'E'],
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