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## gotcloud bam.list error
pjvh@snowwhite:~/ptr-seqshop$ gotcloud/gotcloud genomestrip --run-discovery --metadata example/metadata --conf example/gotcloud.conf --numjobs 8 --region 22:36000000-37000000 --base-prefix example --outdir output
WARNING: Overriding --out-metadata from output/sv/metadata/ to example/metadata
Arguments in effect for /net/snowwhite/home/pjvh/ptr-seqshop/gotcloud/bin/genomestrip.pl:
  Help Options                   :   -help [OFF]  -man [OFF]
  Command options                :   -run-metadata [OFF]  -run-discovery [ON]  -run-genotype [OFF]
                                     -run-thirdparty [OFF]
  Options for input/output data  :   -gotcloudroot|gcroot [/net/snowwhite/home/pjvh/ptr-seqshop/gotcloud]
                                     -conf [example/gotcloud.conf]  -outdir [output]
                                     -list [output/bam.list]  -out [output/sv]  -metadata [example/metadata]
                                     -discovery []  -genotype []  -thirdparty []

## sample-section-in-menu.php
<?php

function theme_slug_customize_register( $wp_customize ) {

  $wp_customize->add_section( 'sample_section',
    array(
      'title' => 'Sample Section',
      'panel' => 'nav_menus',
    )
  );

## sorting.py
def binary(a, needle):
    if len(a)==0 or needle < a[0] or needle > a[len(a)-1]: return -1
    mid = len(a)/2
    if a[mid] > needle: return binary(a[:mid], needle)
    if a[mid] < needle: return mid + binary(a[mid:], needle)
    return mid

## storymaker.py
#storymaker.py
#by megan o'keefe
#created: July 31st, 2015
#last modified: 7/31/2015
#has WordsApi definitions, also working on: wikipedia articles.

import json
import unirest
import wikipedia

## Build Errors
The following errors were automatically identified, please review the full console logs for details:

OS X Errors
Generating moc_ErrorDialog.cpp
CompileC build/libraries/ui/hifi.build/Release/ui.build/Objects-normal/x86_64/ErrorDialog.o libraries/ui/src/ErrorDialog.cpp normal x86_64 c++ com.apple.compilers.llvm.clang.1_0.compiler
    /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/clang -x c++ -arch x86_64 -fmessage-length=0 -fdiagnostics-show-note-include-stack -fmacro-backtrace-limit=0 -std=c++11 -stdlib=libc++ -Wno-trigraphs -fpascal-strings -O3 -Wno-missing-field-initializers -Wno-missing-prototypes -Wno-return-type -Wno-non-virtual-dtor -Wno-overloaded-virtual -Wno-exit-time-destructors -Wno-missing-braces -Wparentheses -Wswitch -Wno-unused-function -Wno-unused-label -Wno-unused-parameter -Wno-unused-variable -Wunused-value -Wno-empty-body -Wno-uninitialized -Wno-unknown-pragmas -Wno-shadow -Wno-four-char-constants -Wno-conversion -Wno-constant-conversion -Wno-int-c

## gist:e4b412ac3fd01dadb455
	func getProfilesByPoints(completionHandler: (users:NSMutableArray) -> ()) {

		var users = NSMutableArray()

		var query = PFQuery(className:"points")
		query.addDescendingOrder("points")

		query.findObjectsInBackgroundWithBlock {
			(objects: [AnyObject]!, error: NSError!) -> Void in
			if error == nil {

## codesearch.py
import asyncio
import aiohttp
import urllib
import json
import tqdm
import math
import sys
import ssl
from urllib import request
from urllib import parse

## ems_azure.rb
  def vm_start(vm, _options = {})
    group = vm.uid_ems.split('\\').first
    vmm = ::Azure::Armrest::VirtualMachineService.new(vm.provider_object)
    vmm.start(vm.name, group)
  rescue => err
    _log.error "vm=[#{vm.name}], error: #{err}"
  end

  def vm_stop(vm, _options = {})
    group = vm.uid_ems.split('\\').first

## post-checkout
#!/bin/bash
#Git Post Merge Hook
#---------------------
#Gets the latest tag info from the git repo and updates the AssemblyInfo.cs file with it.
#This file needs to be place in the .git/hooks/ folder and only works when a git pull is
#made which contains changes in the remote repo.

#get the latest tag info. The 'always' flag will give you a shortened SHA1 if no tag exists.
tag=$(git describe --long)

## check-default-lang.php
<?php

function prefered_language( $available_languages, $http_accept_language = 'auto' ) {
	if ( 'auto' == $http_accept_language ) {
		// $http_accept_language = $_SERVER['HTTP_ACCEPT_LANGUAGE'];
		$http_accept_language = isset( $_SERVER['HTTP_ACCEPT_LANGUAGE'] ) ? $_SERVER['HTTP_ACCEPT_LANGUAGE'] : '';
	}
	preg_match_all( '/([[:alpha:]]{1,8})(-([[:alpha:]|-]{1,8}))?' . '(\s*;\s*q\s*=\s*(1\.0{0,3}|0\.\d{0,3}))?\s*(,|$)/i', $http_accept_language, $hits, PREG_SET_ORDER );

	$bestlang = $available_languages[0];