hiraksarkar

Given the two recent books are out the best is to use them iteratively. I am not gonna add the book by Murphy as I find it not to be self sufficient but rather regard it as a dictionary. Main books

• Understanding deep learning by Prince book and notebook
• Deep Learning foundation and concept book

Murphy's book for reference

• Probabilistic Machine Learning: Advanced Topics book

hiraksarkar

The main proofs are to be read from the following order -- Proofs are given here https://www.statlect.com/fundamentals-of-statistics/ It should be accompanied by the econometrics lecture given here and here

These can be accompanied by the following books

• Foundations of Statistics for Data Scientists R and Python by Agresti and Kateri
• Introductory Econometrics: A Modern Approach by Woodridge

For algorithmic treatment that talks about efficient mechanisms to optimize consult

hiraksarkar

Note

I have changed only two directory names from the original post to be found here

Open account with ngrok.com

Get the autorization code after creating a free account with ngork. You will meet with a screen like following

Install stuff (in colab)

AFAgarap

"""TensorFlow 2.0 implementation of vanilla Autoencoder."""
import numpy as np
import tensorflow as tf

__author__ = "Abien Fred Agarap"

np.random.seed(1)
tf.random.set_seed(1)
batch_size = 128
epochs = 10

Mahedi-61

#!/bin/bash

### steps ####
# Verify the system has a cuda-capable gpu
# Download and install the nvidia cuda toolkit and cudnn
# Setup environmental variables
# Verify the installation
###

### to verify your gpu is cuda enable check

apfejes

import argparse

default_prefix = "ftp.sra.ebi.ac.uk/vol1/fastq/"
ascp_prefix = "ftp.sra.ebi.ac.uk:/vol1/fastq/"
default_protocol = "ftp://"
default_suffix = "*.fastq.gz"
default_ascp_line = "ascp -QT -l 300m -i ~/.ssh/asperaweb_id_dsa.openssh anonftp@ftp.ncbi.nlm.nih.gov:{} {}"


def prepare_url(srr_name, prefix):

k3yavi

https://www.youtube.com/watch?v=F0sRpgnFyMY

## Evil mode
/                       Start search in current buffer
n                       find next
N                       find previous
SPC s c                 clear the searches
:s/text/newtext/gc      Search and replace
SPC s h                 Symbol highlight + options for search, multiple edit,...

jfear

# vim: set ft=snakemake:
shell.prefix("""set -euo pipefail;
             if [ -e /lscratch/$SLURM_JOBID ]; then
                 export TMPDIR=/lscratch/$SLURM_JOBID
             else
                 export TMPDIR=/tmp
             fi;
             """)
workdir: '.'

santisbon

Updating a feature branch

First we'll update your local master branch. Go to your local project and check out the branch you want to merge into (your local master branch)

$ git checkout master

Fetch the remote, bringing the branches and their commits from the remote repository. You can use the -p, --prune option to delete any remote-tracking references that no longer exist in the remote. Commits to master will be stored in a local branch, remotes/origin/master.

lh3

Source	Dst. file type	Protocol	Time (s)	Command Line
NCBI	.sra	ftp	296	wget
NCBI	.fastq.gz	sra toolkit	~23000	fastq-dump -Z --gzip --split-spot
local file	sra=>fastq.gz	sra toolkit	~15000	fastq-dump --gzip --split-spot --split-3
EBI	.fastq.gz	aspera	513+492	aspera -QT -l 300m
EBI	.fastq.gz	ftp	1876+1946	wget

Notes: