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@icaoberg
icaoberg / setup.sh
Last active August 29, 2015 14:14
Simple Git Tutorial
cp -r /home/icaoberg/share/tutorial .
cd tutorial
bash ./prerequisites.sh
. ./source/bin/activate
@icaoberg
icaoberg / script.sh
Last active August 29, 2015 14:15
cellorganizer-demo3D01 public CI script #ubuntu #macosx #matlab #cellorganizer
DEMO='demo3D01'
DIM='3D'
PREFIX=`pwd`/demos/"$DIM"/"$DEMO"
INPUT_DIRECTORY="$PREFIX"/synthesizedImages
if [ -d "$INPUT_DIRECTORY" ]; then
rm -rf "$INPUT_DIRECTORY"
fi
OUTPUT_DIRECTORY="$PREFIX"/projections
@icaoberg
icaoberg / script.sh
Last active August 29, 2015 14:15
cellorganizer-demo3D02 public CI script #ubuntu #macosx #matlab #cellorganizer
DEMO='demo3D02'
DIM='3D'
PREFIX=`pwd`/demos/"$DIM"/"$DEMO"
PROFILE="$PREFIX"/profile.zip
if [ -f "$PROFILE" ]; then
rm -f "$PROFILE"
fi
echo "help $DEMO;
@icaoberg
icaoberg / script.sh
Created February 17, 2015 01:40
cellorganizer-demo3D03 public CI script #ubuntu #macosx #matlab #cellorganizer
DEMO='demo3D03'
DIM='3D'
PREFIX=`pwd`/demos/"$DIM"/"$DEMO"
INPUT_DIRECTORY="$PREFIX"/synthesizedImages
if [ -d "$INPUT_DIRECTORY" ]; then
rm -rf "$INPUT_DIRECTORY"
fi
OUTPUT_DIRECTORY="$PREFIX"/projections
@icaoberg
icaoberg / script.sh
Created February 17, 2015 01:57
cellorganizer-demo3D04 public CI script #ubuntu #macosx #matlab #cellorganizer
DEMO='demo3D04'
DIM='3D'
PREFIX=`pwd`/demos/"$DIM"/"$DEMO"
INPUT_DIRECTORY="$PREFIX"/synthesizedImages
if [ -d "$INPUT_DIRECTORY" ]; then
rm -rf "$INPUT_DIRECTORY"
fi
OUTPUT_DIRECTORY="$PREFIX"/projections
@icaoberg
icaoberg / script.sh
Created February 17, 2015 02:01
cellorganizer-demo3D05 public CI script #ubuntu #macosx #matlab #cellorganizer
DEMO='demo3D05'
DIM='3D'
PREFIX=`pwd`/demos/"$DIM"/"$DEMO"
INPUT_DIRECTORY="$PREFIX"/synthesizedImages
if [ -d "$INPUT_DIRECTORY" ]; then
rm -rf "$INPUT_DIRECTORY"
fi
OUTPUT_DIRECTORY="$PREFIX"/projections
@icaoberg
icaoberg / script.sh
Last active August 29, 2015 14:15
Helper script that downloads the 3D 3T3 dataset from the Murphy Lab at Carnegie Mellon University
#!/bin/bash
echo "*********************"
echo "* LICENSE AGREEMENT *"
echo "*********************"
echo "All data downloaded from the Murphy Lab web site (http://murphylab.web.cmu.edu) remain the property of the
Murphy"
echo "Lab. You are granted a non-exclusive license to use these images for non-commercial, research purposes, with the"
echo "following conditions: (a) you agree to include a reference to"
echo ""
@icaoberg
icaoberg / script.sh
Last active August 29, 2015 14:15
Helper script that downloads the 2D HeLa dataset from the Murphy Lab at Carnegie Mellon University
#!/bin/bash
echo "*********************"
echo "* LICENSE AGREEMENT *"
echo "*********************"
echo "All data downloaded from the Murphy Lab web site (http://murphylab.web.cmu.edu) remain the property of the
Murphy"
echo "Lab. You are granted a non-exclusive license to use these images for non-commercial, research purposes, with the"
echo "following conditions: (a) you agree to include a reference to"
echo ""
@icaoberg
icaoberg / script.sh
Last active August 29, 2015 14:15
Helper script that downloads the 2D 3T3 RandTag Set 1 dataset from the Murphy Lab at Carnegie Mellon University
#!/bin/bash
echo "*********************"
echo "* LICENSE AGREEMENT *"
echo "*********************"
echo "All data downloaded from the Murphy Lab web site (http://murphylab.web.cmu.edu) remain the property of the
Murphy"
echo "Lab. You are granted a non-exclusive license to use these images for non-commercial, research purposes, with the"
echo "following conditions: (a) you agree to include a reference to"
echo ""
@icaoberg
icaoberg / script.sh
Last active August 29, 2015 14:15
Helper script that downloads the 2D 3T3 RandTag Set 2 dataset from the Murphy Lab at Carnegie Mellon University
#!/bin/bash
echo "*********************"
echo "* LICENSE AGREEMENT *"
echo "*********************"
echo "All data downloaded from the Murphy Lab web site (http://murphylab.web.cmu.edu) remain the property of the
Murphy"
echo "Lab. You are granted a non-exclusive license to use these images for non-commercial, research purposes, with the"
echo "following conditions: (a) you agree to include a reference to"
echo ""