Install graph-tool on Mac OS Mavericks with python installed with brew

graph-tool installation on Mavericks.md

Install prerequisites

• Xcode (Not necessary)
• Command Line Tools for Xcode

Install Homebrew

• ruby -e "$(curl -fsSL https://raw.github.com/Homebrew/homebrew/go/install)"
• brew doctor
• brew update

Install Python

• brew install python
• vim ~/.bash_profile
• and insert this code:
  

Set architecture flags

export ARCHFLAGS="-arch x86_64"

Ensure user-installed binaries take precedence

export PATH=/usr/local/bin:$PATH

Load .bashrc if it exists

test -f ~/.bashrc && source ~/.bashrc

• . ~/.bash_profile
• easy_install pip # If you don't have already pip installed

Install libraries and prerequisites

• brew install gcc
• pip install numpy
• pip install scipy
• brew install freetype
• pip install matplotlib

Install graph-tool with brew

• brew tap homebrew/science
• brew install graph-tool

The problem of googol-sparsehash in OSX 10.9 can be solved by using
brew install google-sparsehash --cc=gcc-4.2

A tool so impossible to install is a real dissuasion from use.

Note: when compiling boost, please not that the python bindings are not included by default anymore. This can be solved by using:
brew install --with-c++11 --build-from-source boost -v --with-python

Installing on a new machine and running into more issues. For some reason, this time around the configure script couldn't find the headers and libraries for boost, so I had to solve via export CPPFLAGS="-I/usr/local/Cellar/boost/1.55.0_2/include -L/usr/local/Cellar/boost/1.55.0_2/lib"

homebrew has a separate boost for python now
brew install --with-c++11 --build-from-source boost-python

If you stumple into problems with cairo dependencies, take a look at this issue Homebrew/legacy-homebrew#14123

brew install --with-c++11 --build-from-source boost-python did not work for me, but this thread helped http://stackoverflow.com/questions/26189058/ld-library-not-found-for-lboost-python instead.

Now the problem is that make fails with the following message:

ld: library not found for -lCGAL
clang: error: linker command failed with exit code 1 (use -v to see invocation)
make[4]: *** [libgraph_tool_generation.la] Error 1
make[3]: *** [all-recursive] Error 1
make[2]: *** [all-recursive] Error 1
make[1]: *** [all-recursive] Error 1
make: *** [all] Error 2

I've had a hell of a time installing this, but I think I finally have it working. Some other dependencies available on Homebrew that aren't mentioned above are:

• gtk+3
• gdk-pixbuf
• librsvg
• pygobject
• hicolor-icon-theme

I installed all of these after running make install on graph-tool itself. I'm pretty sure there were others, but I lost count. I also had problems with interactive graphs crashing at runtime because of a missing icon called 'system-run' in GTK. I got around this by putting a file called system-run.png in /usr/share/icons/ and giving read permission to all.

I was able to configure after brew installing / rebuilding boost from scratch, as described here (mentioned by others above): http://stackoverflow.com/questions/26189058/ld-library-not-found-for-lboost-python.

When I tried to make, I found the following error:

./../numpy_bind_old.hh:58:65: error: 'value' is not a member of 'boost::mpl::aux::wrapped_typeboost::mpl::aux::type_wrapper<mpl_::void_ >::type {aka mpl_::void_}'
int val_type = boost::mpl::at<numpy_types,ValueType>::type::value;

As also described here: http://main-discussion-list-for-the-graph-tool-project.982480.n3.nabble.com/Graph-Tool-Mac-OS-Build-Errors-td4025790.html

I switched my python binary to point to "/usr/bin/pythonw2.7" based on the link, which took me a couple hours to find (note: that is version Python 2.7.5 (default, Mar 9 2014, 22:15:05)), as described in the link. Previously, I was using Python 3.4.1 (default, May 19 2014, 13:10:29). Using the pythonw2.7 binary still didn't seem to help. It looks to me like there is some boost compatibility issue. Anybody else seeing this?

For now it is brew install boost-python.

This is a rather long list. What is wrong with using direct recipe from https://github.com/Homebrew/homebrew-science/blob/master/graph-tool.rb ?

$ brew tap homebrew-science
$ brew install graph-tool

It did work for me (I had brew-installed Python, and XCode).

Use that one, please.
$ brew tap homebrew/science
$ brew install graph-tool

This gist is an old solution, that was also featured on the graph-tool website back then.
But now the best solution is the official one with Brew, which came later:

$ brew tap homebrew-science
$ brew install graph-tool

I've updated the file to the current process.

Ending 2017, this worked perfectly for me.

Edit: 1 Week later - NO it doesn't work. I spoke far far too soon. When I try to run a simple script with graph-tool it crashes. I'm not even back to square one, I'm at square -15. Seriously thinking of abandoning graph-tool and heading for NetworkX or iGraph. Shame.

The brew tap homebrew/science should be updated to brew tap brewsci/bio. Otherwise, thanks for this!

what about for conda-installed python users?

I'm on High Sierra and the change in comment by @maxvonhippel worked for me.

To sum up

$ brew tab homebrew/science
Updating Homebrew...

Error: homebrew/science was deprecated. This tap is now empty as all its formulae were migrated.
$
$ brew tap homebrew-science
Updating Homebrew...
==> Updated Formulae
nim

Error: Invalid tap name 'homebrew-science'
$
$ brew tap brewsci/bio
==> Tapping brewsci/bio
Cloning into '/usr/local/Homebrew/Library/Taps/brewsci/homebrew-bio'...

I am trying to install graph-tool on my Mac machine and I want to be installed on python 2.7. Well it seemed it got installed using both port and brew but when I imported it in python I got this error: Segmentation fault: 11. I tried to install it by compiling it by myself using the following configuration line:

./configure CC=clang CXX=clang++ CPPFLAGS="-I/usr/local/Celler/py2cairo/1.17.1/include" PYTHON_EXTRA_LDFLAGS="-L/usr/local/bin"

when I ran make install, I got this error:

/usr/local/Cellar/llvm/7.0.0/include/c++/v1/functional:670:21: error: invalid operands to binary expression ('const
      CGAL::Triangulation_vertex_base_3<CGAL::Epick,
      CGAL::Triangulation_ds_vertex_base_3<CGAL::Triangulation_data_structure_3<CGAL::Triangulation_vertex_base_3<CGAL::Epick,
      CGAL::Triangulation_ds_vertex_base_3<void> >, CGAL::Delaunay_triangulation_cell_base_3<CGAL::Epick,
      CGAL::Triangulation_cell_base_3<CGAL::Epick, CGAL::Triangulation_ds_cell_base_3<void> > >, CGAL::Sequential_tag> >
      >' and 'const CGAL::Triangulation_vertex_base_3<CGAL::Epick,
      CGAL::Triangulation_ds_vertex_base_3<CGAL::Triangulation_data_structure_3<CGAL::Triangulation_vertex_base_3<CGAL::Epick,
      CGAL::Triangulation_ds_vertex_base_3<void> >, CGAL::Delaunay_triangulation_cell_base_3<CGAL::Epick,
      CGAL::Triangulation_cell_base_3<CGAL::Epick, CGAL::Triangulation_ds_cell_base_3<void> > >, CGAL::Sequential_tag> >
      >')
        {return __x == __y;}
                ~~~ ^  ~~~
/usr/local/Cellar/llvm/7.0.0/include/c++/v1/unordered_map:486:17: note: in instantiation of member function
      'std::__1::equal_to<CGAL::Triangulation_vertex_base_3<CGAL::Epick,
      CGAL::Triangulation_ds_vertex_base_3<CGAL::Triangulation_data_structure_3<CGAL::Triangulation_vertex_base_3<CGAL::Epick,
      CGAL::Triangulation_ds_vertex_base_3<void> >, CGAL::Delaunay_triangulation_cell_base_3<CGAL::Epick,
      CGAL::Triangulation_cell_base_3<CGAL::Epick, CGAL::Triangulation_ds_cell_base_3<void> > >, CGAL::Sequential_tag> > >
      >::operator()' requested here
        {return static_cast<const _Pred&>(*this)(__x.__get_value().first, __y);}
                ^
/usr/local/Cellar/llvm/7.0.0/include/c++/v1/__hash_table:2043:21: note: in instantiation of member function
      'std::__1::__unordered_map_equal<CGAL::Triangulation_vertex_base_3<CGAL::Epick,
      CGAL::Triangulation_ds_vertex_base_3<CGAL::Triangulation_data_structure_3<CGAL::Triangulation_vertex_base_3<CGAL::Epick,
      CGAL::Triangulation_ds_vertex_base_3<void> >, CGAL::Delaunay_triangulation_cell_base_3<CGAL::Epick,
      CGAL::Triangulation_cell_base_3<CGAL::Epick, CGAL::Triangulation_ds_cell_base_3<void> > >, CGAL::Sequential_tag> >
      >, std::__1::__hash_value_type<CGAL::Triangulation_vertex_base_3<CGAL::Epick,
      CGAL::Triangulation_ds_vertex_base_3<CGAL::Triangulation_data_structure_3<CGAL::Triangulation_vertex_base_3<CGAL::Epick,
      CGAL::Triangulation_ds_vertex_base_3<void> >, CGAL::Delaunay_triangulation_cell_base_3<CGAL::Epick,
      CGAL::Triangulation_cell_base_3<CGAL::Epick, CGAL::Triangulation_ds_cell_base_3<void> > >, CGAL::Sequential_tag> >
      >, unsigned long>, std::__1::equal_to<CGAL::Triangulation_vertex_base_3<CGAL::Epick,
      CGAL::Triangulation_ds_vertex_base_3<CGAL::Triangulation_data_structure_3<CGAL::Triangulation_vertex_base_3<CGAL::Epick,
      CGAL::Triangulation_ds_vertex_base_3<void> >, CGAL::Delaunay_triangulation_cell_base_3<CGAL::Epick,
      CGAL::Triangulation_cell_base_3<CGAL::Epick, CGAL::Triangulation_ds_cell_base_3<void> > >, CGAL::Sequential_tag> > >
      >, true>::operator()' requested here
                if (key_eq()(__nd->__upcast()->__value_, __k))
                    ^
/usr/local/Cellar/llvm/7.0.0/include/c++/v1/unordered_map:1489:21: note: in instantiation of function template
      specialization 'std::__1::__hash_table<std::__1::__hash_value_type<CGAL::Triangulation_vertex_base_3<CGAL::Epick,
      CGAL::Triangulation_ds_vertex_base_3<CGAL::Triangulation_data_structure_3<CGAL::Triangulation_vertex_base_3<CGAL::Epick,
      CGAL::Triangulation_ds_vertex_base_3<void> >, CGAL::Delaunay_triangulation_cell_base_3<CGAL::Epick,
      CGAL::Triangulation_cell_base_3<CGAL::Epick, CGAL::Triangulation_ds_cell_base_3<void> > >, CGAL::Sequential_tag> >
      >, unsigned long>, std::__1::__unordered_map_hasher<CGAL::Triangulation_vertex_base_3<CGAL::Epick,
      CGAL::Triangulation_ds_vertex_base_3<CGAL::Triangulation_data_structure_3<CGAL::Triangulation_vertex_base_3<CGAL::Epick,
      CGAL::Triangulation_ds_vertex_base_3<void> >, CGAL::Delaunay_triangulation_cell_base_3<CGAL::Epick,
      CGAL::Triangulation_cell_base_3<CGAL::Epick, CGAL::Triangulation_ds_cell_base_3<void> > >, CGAL::Sequential_tag> >
      >, std::__1::__hash_value_type<CGAL::Triangulation_vertex_base_3<CGAL::Epick,
      CGAL::Triangulation_ds_vertex_base_3<CGAL::Triangulation_data_structure_3<CGAL::Triangulation_vertex_base_3<CGAL::Epick,
      CGAL::Triangulation_ds_vertex_base_3<void> >, CGAL::Delaunay_triangulation_cell_base_3<CGAL::Epick,
      CGAL::Triangulation_cell_base_3<CGAL::Epick, CGAL::Triangulation_ds_cell_base_3<void> > >, CGAL::Sequential_tag> >
      >, unsigned long>, graph_tool::hash_point, true>,
      std::__1::__unordered_map_equal<CGAL::Triangulation_vertex_base_3<CGAL::Epick,
      CGAL::Triangulation_ds_vertex_base_3<CGAL::Triangulation_data_structure_3<CGAL::Triangulation_vertex_base_3<CGAL::Epick,
      CGAL::Triangulation_ds_vertex_base_3<void> >, CGAL::Delaunay_triangulation_cell_base_3<CGAL::Epick,
      CGAL::Triangulation_cell_base_3<CGAL::Epick, CGAL::Triangulation_ds_cell_base_3<void> > >, CGAL::Sequential_tag> >
      >, std::__1::__hash_value_type<CGAL::Triangulation_vertex_base_3<CGAL::Epick,
      CGAL::Triangulation_ds_vertex_base_3<CGAL::Triangulation_data_structure_3<CGAL::Triangulation_vertex_base_3<CGAL::Epick,
      CGAL::Triangulation_ds_vertex_base_3<void> >, CGAL::Delaunay_triangulation_cell_base_3<CGAL::Epick,
      CGAL::Triangulation_cell_base_3<CGAL::Epick, CGAL::Triangulation_ds_cell_base_3<void> > >, CGAL::Sequential_tag> >
      >, unsigned long>, std::__1::equal_to<CGAL::Triangulation_vertex_base_3<CGAL::Epick,
      CGAL::Triangulation_ds_vertex_base_3<CGAL::Triangulation_data_structure_3<CGAL::Triangulation_vertex_base_3<CGAL::Epick,
      CGAL::Triangulation_ds_vertex_base_3<void> >, CGAL::Delaunay_triangulation_cell_base_3<CGAL::Epick,
      CGAL::Triangulation_cell_base_3<CGAL::Epick, CGAL::Triangulation_ds_cell_base_3<void> > >, CGAL::Sequential_tag> > >
      >, true>, std::__1::allocator<std::__1::__hash_value_type<CGAL::Triangulation_vertex_base_3<CGAL::Epick,
      CGAL::Triangulation_ds_vertex_base_3<CGAL::Triangulation_data_structure_3<CGAL::Triangulation_vertex_base_3<CGAL::Epick,
      CGAL::Triangulation_ds_vertex_base_3<void> >, CGAL::Delaunay_triangulation_cell_base_3<CGAL::Epick,
      CGAL::Triangulation_cell_base_3<CGAL::Epick, CGAL::Triangulation_ds_cell_base_3<void> > >, CGAL::Sequential_tag> >
      >, unsigned long> > >::__emplace_unique_key_args<CGAL::Triangulation_vertex_base_3<CGAL::Epick,
      CGAL::Triangulation_ds_vertex_base_3<CGAL::Triangulation_data_structure_3<CGAL::Triangulation_vertex_base_3<CGAL::Epick,
      CGAL::Triangulation_ds_vertex_base_3<void> >, CGAL::Delaunay_triangulation_cell_base_3<CGAL::Epick,
      CGAL::Triangulation_cell_base_3<CGAL::Epick, CGAL::Triangulation_ds_cell_base_3<void> > >, CGAL::Sequential_tag> >
      >, const std::__1::piecewise_construct_t &, std::__1::tuple<const CGAL::Triangulation_vertex_base_3<CGAL::Epick,
      CGAL::Triangulation_ds_vertex_base_3<CGAL::Triangulation_data_structure_3<CGAL::Triangulation_vertex_base_3<CGAL::Epick,
      CGAL::Triangulation_ds_vertex_base_3<void> >, CGAL::Delaunay_triangulation_cell_base_3<CGAL::Epick,
      CGAL::Triangulation_cell_base_3<CGAL::Epick, CGAL::Triangulation_ds_cell_base_3<void> > >, CGAL::Sequential_tag> > >
      &>, std::__1::tuple<> >' requested here
    return __table_.__emplace_unique_key_args(__k,
                    ^
./graph_triangulation.hh:117:13: note: in instantiation of member function
      'std::__1::unordered_map<CGAL::Triangulation_vertex_base_3<CGAL::Epick,
      CGAL::Triangulation_ds_vertex_base_3<CGAL::Triangulation_data_structure_3<CGAL::Triangulation_vertex_base_3<CGAL::Epick,
      CGAL::Triangulation_ds_vertex_base_3<void> >, CGAL::Delaunay_triangulation_cell_base_3<CGAL::Epick,
      CGAL::Triangulation_cell_base_3<CGAL::Epick, CGAL::Triangulation_ds_cell_base_3<void> > >, CGAL::Sequential_tag> >
      >, unsigned long, graph_tool::hash_point, std::__1::equal_to<CGAL::Triangulation_vertex_base_3<CGAL::Epick,
      CGAL::Triangulation_ds_vertex_base_3<CGAL::Triangulation_data_structure_3<CGAL::Triangulation_vertex_base_3<CGAL::Epick,
      CGAL::Triangulation_ds_vertex_base_3<void> >, CGAL::Delaunay_triangulation_cell_base_3<CGAL::Epick,
      CGAL::Triangulation_cell_base_3<CGAL::Epick, CGAL::Triangulation_ds_cell_base_3<void> > >, CGAL::Sequential_tag> > >
      >, std::__1::allocator<std::__1::pair<const CGAL::Triangulation_vertex_base_3<CGAL::Epick,
      CGAL::Triangulation_ds_vertex_base_3<CGAL::Triangulation_data_structure_3<CGAL::Triangulation_vertex_base_3<CGAL::Epick,
      CGAL::Triangulation_ds_vertex_base_3<void> >, CGAL::Delaunay_triangulation_cell_base_3<CGAL::Epick,
      CGAL::Triangulation_cell_base_3<CGAL::Epick, CGAL::Triangulation_ds_cell_base_3<void> > >, CGAL::Sequential_tag> >
      >, unsigned long> > >::operator[]' requested here
            vertex_map[*T.insert(p)] = v;
            ^
graph_triangulation.cc:97:17: note: in instantiation of function template specialization
      'graph_tool::get_triangulation<CGAL::Delaunay_triangulation_3<CGAL::Epick, CGAL::Default, CGAL::Default,
      CGAL::Default>, std::__1::integral_constant<bool, false>
      >::operator()<boost::undirected_adaptor<boost::adj_list<unsigned long> >, boost::multi_array_ref<double, 2>,
      boost::checked_vector_property_map<std::__1::vector<double, std::__1::allocator<double> >,
      boost::typed_identity_property_map<unsigned long> > >' requested here
                (g, points_array, pos_map);
                ^
/usr/local/include/CGAL/Modular_arithmetic/Residue_type.h:292:13: note: candidate function not viable: no known conversion
      from 'const CGAL::Triangulation_vertex_base_3<CGAL::Epick,
      CGAL::Triangulation_ds_vertex_base_3<CGAL::Triangulation_data_structure_3<CGAL::Triangulation_vertex_base_3<CGAL::Epick,
      CGAL::Triangulation_ds_vertex_base_3<void> >, CGAL::Delaunay_triangulation_cell_base_3<CGAL::Epick,
      CGAL::Triangulation_cell_base_3<CGAL::Epick, CGAL::Triangulation_ds_cell_base_3<void> > >, CGAL::Sequential_tag> >
      >' to 'const CGAL::Residue' for 1st argument
inline bool operator == (const Residue& p1, const Residue& p2)
            ^
/usr/local/include/CGAL/Modular_arithmetic/Residue_type.h:294:13: note: candidate function not viable: no known conversion
      from 'const CGAL::Triangulation_vertex_base_3<CGAL::Epick,
      CGAL::Triangulation_ds_vertex_base_3<CGAL::Triangulation_data_structure_3<CGAL::Triangulation_vertex_base_3<CGAL::Epick,
      CGAL::Triangulation_ds_vertex_base_3<void> >, CGAL::Delaunay_triangulation_cell_base_3<CGAL::Epick,
      CGAL::Triangulation_cell_base_3<CGAL::Epick, CGAL::Triangulation_ds_cell_base_3<void> > >, CGAL::Sequential_tag> >
      >' to 'const CGAL::Residue' for 1st argument
inline bool operator == (const Residue& p1, int p2)
            ^
/usr/local/include/CGAL/MP_Float.h:394:6: note: candidate function not viable: no known conversion from 'const
      CGAL::Triangulation_vertex_base_3<CGAL::Epick,
      CGAL::Triangulation_ds_vertex_base_3<CGAL::Triangulation_data_structure_3<CGAL::Triangulation_vertex_base_3<CGAL::Epick,
      CGAL::Triangulation_ds_vertex_base_3<void> >, CGAL::Delaunay_triangulation_cell_base_3<CGAL::Epick,
      CGAL::Triangulation_cell_base_3<CGAL::Epick, CGAL::Triangulation_ds_cell_base_3<void> > >, CGAL::Sequential_tag> >
      >' to 'const CGAL::MP_Float' for 1st argument
bool operator==(const MP_Float &a, const MP_Float &b)
     ^
/usr/local/include/CGAL/GMP/Gmpzf_type.h:561:6: note: candidate function not viable: no known conversion from 'const
      CGAL::Triangulation_vertex_base_3<CGAL::Epick,
      CGAL::Triangulation_ds_vertex_base_3<CGAL::Triangulation_data_structure_3<CGAL::Triangulation_vertex_base_3<CGAL::Epick,
      CGAL::Triangulation_ds_vertex_base_3<void> >, CGAL::Delaunay_triangulation_cell_base_3<CGAL::Epick,
      CGAL::Triangulation_cell_base_3<CGAL::Epick, CGAL::Triangulation_ds_cell_base_3<void> > >, CGAL::Sequential_tag> >
      >' to 'const CGAL::Gmpzf' for 1st argument
bool operator==(const Gmpzf &a, const Gmpzf &b)
     ^
/usr/local/include/CGAL/GMP/Gmpzf_type.h:574:6: note: candidate function not viable: no known conversion from 'const
      CGAL::Triangulation_vertex_base_3<CGAL::Epick,
      CGAL::Triangulation_ds_vertex_base_3<CGAL::Triangulation_data_structure_3<CGAL::Triangulation_vertex_base_3<CGAL::Epick,
      CGAL::Triangulation_ds_vertex_base_3<void> >, CGAL::Delaunay_triangulation_cell_base_3<CGAL::Epick,
      CGAL::Triangulation_cell_base_3<CGAL::Epick, CGAL::Triangulation_ds_cell_base_3<void> > >, CGAL::Sequential_tag> >
      >' to 'const CGAL::Gmpzf' for 1st argument
bool operator==(const Gmpzf &a, int b)
     ^
/usr/local/include/CGAL/GMP/Gmpfr_type.h:1231:6: note: candidate function not viable: no known conversion from 'const
      CGAL::Triangulation_vertex_base_3<CGAL::Epick,
      CGAL::Triangulation_ds_vertex_base_3<CGAL::Triangulation_data_structure_3<CGAL::Triangulation_vertex_base_3<CGAL::Epick,
      CGAL::Triangulation_ds_vertex_base_3<void> >, CGAL::Delaunay_triangulation_cell_base_3<CGAL::Epick,
      CGAL::Triangulation_cell_base_3<CGAL::Epick, CGAL::Triangulation_ds_cell_base_3<void> > >, CGAL::Sequential_tag> >
      >' to 'const CGAL::Gmpfr' for 1st argument
bool operator==(const Gmpfr &a,const Gmpfr &b){
     ^
/usr/local/include/CGAL/GMP/Gmpfr_type.h:1246:6: note: candidate function not viable: no known conversion from 'const
      CGAL::Triangulation_vertex_base_3<CGAL::Epick,
      CGAL::Triangulation_ds_vertex_base_3<CGAL::Triangulation_data_structure_3<CGAL::Triangulation_vertex_base_3<CGAL::Epick,
      CGAL::Triangulation_ds_vertex_base_3<void> >, CGAL::Delaunay_triangulation_cell_base_3<CGAL::Epick,
      CGAL::Triangulation_cell_base_3<CGAL::Epick, CGAL::Triangulation_ds_cell_base_3<void> > >, CGAL::Sequential_tag> >
      >' to 'const CGAL::Gmpfr' for 1st argument
bool operator==(const Gmpfr &a,long b){
     ^
/usr/local/include/CGAL/GMP/Gmpfr_type.h:1261:6: note: candidate function not viable: no known conversion from 'const
      CGAL::Triangulation_vertex_base_3<CGAL::Epick,
      CGAL::Triangulation_ds_vertex_base_3<CGAL::Triangulation_data_structure_3<CGAL::Triangulation_vertex_base_3<CGAL::Epick,
      CGAL::Triangulation_ds_vertex_base_3<void> >, CGAL::Delaunay_triangulation_cell_base_3<CGAL::Epick,
      CGAL::Triangulation_cell_base_3<CGAL::Epick, CGAL::Triangulation_ds_cell_base_3<void> > >, CGAL::Sequential_tag> >
      >' to 'const CGAL::Gmpfr' for 1st argument
bool operator==(const Gmpfr &a,unsigned long b){
     ^
/usr/local/include/CGAL/GMP/Gmpfr_type.h:1276:6: note: candidate function not viable: no known conversion from 'const
      CGAL::Triangulation_vertex_base_3<CGAL::Epick,
      CGAL::Triangulation_ds_vertex_base_3<CGAL::Triangulation_data_structure_3<CGAL::Triangulation_vertex_base_3<CGAL::Epick,
      CGAL::Triangulation_ds_vertex_base_3<void> >, CGAL::Delaunay_triangulation_cell_base_3<CGAL::Epick,
      CGAL::Triangulation_cell_base_3<CGAL::Epick, CGAL::Triangulation_ds_cell_base_3<void> > >, CGAL::Sequential_tag> >
      >' to 'const CGAL::Gmpfr' for 1st argument
bool operator==(const Gmpfr &a,int b){
     ^
/usr/local/include/CGAL/GMP/Gmpfr_type.h:1291:6: note: candidate function not viable: no known conversion from 'const
      CGAL::Triangulation_vertex_base_3<CGAL::Epick,
      CGAL::Triangulation_ds_vertex_base_3<CGAL::Triangulation_data_structure_3<CGAL::Triangulation_vertex_base_3<CGAL::Epick,
      CGAL::Triangulation_ds_vertex_base_3<void> >, CGAL::Delaunay_triangulation_cell_base_3<CGAL::Epick,
      CGAL::Triangulation_cell_base_3<CGAL::Epick, CGAL::Triangulation_ds_cell_base_3<void> > >, CGAL::Sequential_tag> >
      >' to 'const CGAL::Gmpfr' for 1st argument
bool operator==(const Gmpfr &a,double b){
     ^
/usr/local/include/CGAL/GMP/Gmpfr_type.h:1323:6: note: candidate function not viable: no known conversion from 'const
      CGAL::Triangulation_vertex_base_3<CGAL::Epick,
      CGAL::Triangulation_ds_vertex_base_3<CGAL::Triangulation_data_structure_3<CGAL::Triangulation_vertex_base_3<CGAL::Epick,
      CGAL::Triangulation_ds_vertex_base_3<void> >, CGAL::Delaunay_triangulation_cell_base_3<CGAL::Epick,
      CGAL::Triangulation_cell_base_3<CGAL::Epick, CGAL::Triangulation_ds_cell_base_3<void> > >, CGAL::Sequential_tag> >
      >' to 'const CGAL::Gmpfr' for 1st argument
bool operator==(const Gmpfr &a,long double b){
     ^
/usr/local/include/CGAL/GMP/Gmpfr_type.h:1339:6: note: candidate function not viable: no known conversion from 'const
      CGAL::Triangulation_vertex_base_3<CGAL::Epick,
      CGAL::Triangulation_ds_vertex_base_3<CGAL::Triangulation_data_structure_3<CGAL::Triangulation_vertex_base_3<CGAL::Epick,
      CGAL::Triangulation_ds_vertex_base_3<void> >, CGAL::Delaunay_triangulation_cell_base_3<CGAL::Epick,
      CGAL::Triangulation_cell_base_3<CGAL::Epick, CGAL::Triangulation_ds_cell_base_3<void> > >, CGAL::Sequential_tag> >
      >' to 'const CGAL::Gmpfr' for 1st argument
bool operator==(const Gmpfr &a,const Gmpz &b){
     ^
graph_triangulation.cc:46:6: note: candidate function not viable: no known conversion from 'const
      Triangulation_vertex_base_3<[...], Triangulation_ds_vertex_base_3<Triangulation_data_structure_3<[...],
      CGAL::Delaunay_triangulation_cell_base_3<CGAL::Epick, CGAL::Triangulation_cell_base_3<CGAL::Epick,
      CGAL::Triangulation_ds_cell_base_3<void> > >, [...]>>>' to 'const Triangulation_vertex_base_3<[...],
      Triangulation_ds_vertex_base_3<Triangulation_data_structure_3<[...], CGAL::Triangulation_cell_base_3<CGAL::Epick,
      CGAL::Triangulation_ds_cell_base_3<void> >, [...]>>>' for 1st argument
bool operator==(const SimpleTriangulation::Vertex& a,
     ^
graph_triangulation.cc:63:6: note: candidate function not viable: no known conversion from 'const
      Triangulation_vertex_base_3<CGAL::Epick,
      CGAL::Triangulation_ds_vertex_base_3<CGAL::Triangulation_data_structure_3<CGAL::Triangulation_vertex_base_3<CGAL::Epick,
      CGAL::Triangulation_ds_vertex_base_3<void> >, CGAL::Delaunay_triangulation_cell_base_3<CGAL::Epick,
      CGAL::Triangulation_cell_base_3<CGAL::Epick, CGAL::Triangulation_ds_cell_base_3<void> > >, CGAL::Sequential_tag>
      >>' to 'const Triangulation_vertex_base_3<CGAL::Periodic_3_Delaunay_triangulation_traits_3<CGAL::Epick,
      CGAL::Periodic_3_offset_3, true>,
      CGAL::Triangulation_vertex_base_3<CGAL::Periodic_3_Delaunay_triangulation_traits_3<CGAL::Epick,
      CGAL::Periodic_3_offset_3, true>, CGAL::Periodic_3_triangulation_ds_vertex_base_3<void>
      >::Rebind_TDS<CGAL::Triangulation_data_structure_3<CGAL::Triangulation_vertex_base_3<CGAL::Periodic_3_Delaunay_triangulation_traits_3<CGAL::Epick,
      CGAL::Periodic_3_offset_3, true>, CGAL::Periodic_3_triangulation_ds_vertex_base_3<void> >,
      CGAL::Triangulation_cell_base_3<CGAL::Periodic_3_Delaunay_triangulation_traits_3<CGAL::Epick,
      CGAL::Periodic_3_offset_3, true>, CGAL::Periodic_3_triangulation_ds_cell_base_3<void> >, CGAL::Sequential_tag>
      >::DSVb2>' for 1st argument
bool operator==(const PeriodicDelaunayTriangulation::Vertex& a,
     ^
/usr/local/Cellar/llvm/7.0.0/include/c++/v1/utility:558:1: note: candidate template ignored: could not match 'pair'
      against 'Triangulation_vertex_base_3'
operator==(const pair<_T1,_T2>& __x, const pair<_T1,_T2>& __y)
^
/usr/local/Cellar/llvm/7.0.0/include/c++/v1/iterator:694:1: note: candidate template ignored: could not match
      'reverse_iterator' against 'Triangulation_vertex_base_3'
operator==(const reverse_iterator<_Iter1>& __x, const reverse_iterator<_Iter2>& __y)
^
/usr/local/Cellar/llvm/7.0.0/include/c++/v1/iterator:923:1: note: candidate template ignored: could not match
      'istream_iterator' against 'Triangulation_vertex_base_3'
operator==(const istream_iterator<_Tp, _CharT, _Traits, _Distance>& __x,
^
/usr/local/Cellar/llvm/7.0.0/include/c++/v1/iterator:1027:6: note: candidate template ignored: could not match
      'istreambuf_iterator' against 'Triangulation_vertex_base_3'
bool operator==(const istreambuf_iterator<_CharT,_Traits>& __a,
     ^
/usr/local/Cellar/llvm/7.0.0/include/c++/v1/iterator:1135:1: note: candidate template ignored: could not match
      'move_iterator' against 'Triangulation_vertex_base_3'
operator==(const move_iterator<_Iter1>& __x, const move_iterator<_Iter2>& __y)
^
/usr/local/Cellar/llvm/7.0.0/include/c++/v1/iterator:1507:1: note: candidate template ignored: could not match
      '__wrap_iter' against 'Triangulation_vertex_base_3'
operator==(const __wrap_iter<_Iter1>& __x, const __wrap_iter<_Iter2>& __y) _NOEXCEPT_DEBUG
^
/usr/local/Cellar/llvm/7.0.0/include/c++/v1/tuple:1139:1: note: candidate template ignored: could not match 'tuple'
      against 'Triangulation_vertex_base_3'
operator==(const tuple<_Tp...>& __x, const tuple<_Up...>& __y)
^
/usr/local/Cellar/llvm/7.0.0/include/c++/v1/memory:1972:6: note: candidate template ignored: could not match 'allocator'
      against 'Triangulation_vertex_base_3'
bool operator==(const allocator<_Tp>&, const allocator<_Up>&) _NOEXCEPT {return true;}
     ^
/usr/local/Cellar/llvm/7.0.0/include/c++/v1/memory:2946:1: note: candidate template ignored: could not match 'unique_ptr'
      against 'Triangulation_vertex_base_3'
operator==(const unique_ptr<_T1, _D1>& __x, const unique_ptr<_T2, _D2>& __y) {return __x.get() == __y.get();}
^
/usr/local/Cellar/llvm/7.0.0/include/c++/v1/memory:2982:1: note: candidate template ignored: could not match 'unique_ptr'
      against 'Triangulation_vertex_base_3'
operator==(const unique_ptr<_T1, _D1>& __x, nullptr_t) _NOEXCEPT
^
/usr/local/Cellar/llvm/7.0.0/include/c++/v1/memory:2990:1: note: candidate template ignored: could not match 'unique_ptr'
      against 'Triangulation_vertex_base_3'
operator==(nullptr_t, const unique_ptr<_T1, _D1>& __x) _NOEXCEPT
^
/usr/local/Cellar/llvm/7.0.0/include/c++/v1/memory:4778:1: note: candidate template ignored: could not match 'shared_ptr'
      against 'Triangulation_vertex_base_3'
operator==(const shared_ptr<_Tp>& __x, const shared_ptr<_Up>& __y) _NOEXCEPT
^
/usr/local/Cellar/llvm/7.0.0/include/c++/v1/memory:4832:1: note: candidate template ignored: could not match 'shared_ptr'
      against 'Triangulation_vertex_base_3'
operator==(const shared_ptr<_Tp>& __x, nullptr_t) _NOEXCEPT
^
/usr/local/Cellar/llvm/7.0.0/include/c++/v1/memory:4840:1: note: candidate template ignored: could not match 'shared_ptr'
      against 'Triangulation_vertex_base_3'
operator==(nullptr_t, const shared_ptr<_Tp>& __x) _NOEXCEPT
^
/usr/local/include/CGAL/Uncertain.h:369:17: note: candidate template ignored: could not match 'Uncertain' against
      'Triangulation_vertex_base_3'
Uncertain<bool> operator==(Uncertain<T> a, Uncertain<T> b)
                ^
/usr/local/include/CGAL/Uncertain.h:380:17: note: candidate template ignored: could not match 'Uncertain' against
      'Triangulation_vertex_base_3'
Uncertain<bool> operator==(Uncertain<T> a, T b)
                ^
/usr/local/include/CGAL/Uncertain.h:391:17: note: candidate template ignored: could not match 'Uncertain' against
      'Triangulation_vertex_base_3'
Uncertain<bool> operator==(T a, Uncertain<T> b)
                ^
/usr/local/include/CGAL/Interval_nt.h:262:1: note: candidate template ignored: could not match 'Interval_nt' against
      'Triangulation_vertex_base_3'
operator==(const Interval_nt<Protected> &a, const Interval_nt<Protected> &b)
^
/usr/local/include/CGAL/Interval_nt.h:313:1: note: candidate template ignored: could not match 'Interval_nt' against
      'Triangulation_vertex_base_3'
operator==(double a, const Interval_nt<Protected> &b)
^
/usr/local/include/CGAL/Interval_nt.h:361:1: note: candidate template ignored: could not match 'Interval_nt' against
      'Triangulation_vertex_base_3'
operator==(const Interval_nt<Protected> &a, double b)
^
/usr/local/include/CGAL/Weighted_point_2.h:191:1: note: candidate template ignored: could not match 'Weighted_point_2'
      against 'Triangulation_vertex_base_3'
operator==(const Origin& o, const Weighted_point_2<R>& p)
^
/usr/local/include/CGAL/Weighted_point_2.h:204:1: note: candidate template ignored: could not match 'Point_2' against
      'Triangulation_vertex_base_3'
operator==(const Point_2<R>& bp, const Weighted_point_2<R>& p)
^
/usr/local/include/CGAL/Weighted_point_2.h:216:1: note: candidate template ignored: could not match 'Weighted_point_2'
      against 'Triangulation_vertex_base_3'
operator==(const Weighted_point_2<R>& p, const Point_2<R>& bp)
^
/usr/local/include/CGAL/Weighted_point_2.h:228:1: note: candidate template ignored: could not match 'Weighted_point_2'
      against 'Triangulation_vertex_base_3'
operator==(const Weighted_point_2<R>& p, const Weighted_point_2<R>& p2)
^
/usr/local/include/CGAL/Vector_2.h:260:1: note: candidate template ignored: could not match 'Vector_2' against
      'Triangulation_vertex_base_3'
operator==(const Vector_2<R> &v, const Null_vector &n)
^
/usr/local/include/CGAL/Vector_2.h:268:1: note: candidate template ignored: could not match 'Vector_2' against
      'Triangulation_vertex_base_3'
operator==(const Null_vector &n, const Vector_2<R> &v)
^
/usr/local/include/CGAL/Point_3.h:205:1: note: candidate template ignored: could not match 'Point_3' against
      'Triangulation_vertex_base_3'
operator==(const Origin& o, const Point_3<R>& p)
^
/usr/local/include/CGAL/Weighted_point_3.h:206:1: note: candidate template ignored: could not match 'Weighted_point_3'
      against 'Triangulation_vertex_base_3'
operator==(const Origin& o, const Weighted_point_3<R>& p)
^
/usr/local/include/CGAL/Weighted_point_3.h:218:1: note: candidate template ignored: could not match 'Point_3' against
      'Triangulation_vertex_base_3'
operator==(const Point_3<R>& bp, const Weighted_point_3<R>& p)
^
/usr/local/include/CGAL/Weighted_point_3.h:230:1: note: candidate template ignored: could not match 'Weighted_point_3'
      against 'Triangulation_vertex_base_3'
operator==(const Weighted_point_3<R>& p, const Point_3<R>& bp)
^
/usr/local/include/CGAL/Weighted_point_3.h:242:1: note: candidate template ignored: could not match 'Weighted_point_3'
      against 'Triangulation_vertex_base_3'
operator==(const Weighted_point_3<R>& p, const Weighted_point_3<R>& p2)
^
/usr/local/include/CGAL/Circle_3.h:165:1: note: candidate template ignored: could not match 'Circle_3' against
      'Triangulation_vertex_base_3'
operator==(const Circle_3<R> &p,
^
/usr/local/include/CGAL/Kernel/global_functions_2.h:42:1: note: candidate template ignored: could not match 'Point_2'
      against 'Triangulation_vertex_base_3'
operator==(const Point_2<K> &p, const Origin& o)
^
/usr/local/include/CGAL/Kernel/global_functions_2.h:811:1: note: candidate template ignored: could not match 'Point_2'
      against 'Triangulation_vertex_base_3'
operator==(const Point_2<K>& p, const Point_2<K>& q)
^
/usr/local/include/CGAL/Kernel/global_functions_2.h:847:1: note: candidate template ignored: could not match 'Vector_2'
      against 'Triangulation_vertex_base_3'
operator==(const Vector_2<K>& v, const Vector_2<K>& w)
^
/usr/local/include/CGAL/Kernel/global_functions_3.h:759:1: note: candidate template ignored: could not match 'Point_3'
      against 'Triangulation_vertex_base_3'
operator==(const Point_3<K>& p, const Point_3<K>& q)
^
/usr/local/include/CGAL/Kernel/global_functions_3.h:771:1: note: candidate template ignored: could not match 'Point_3'
      against 'Triangulation_vertex_base_3'
operator==(const Point_3<K>& p, const Origin& o)
^
/usr/local/include/CGAL/Kernel/global_functions_3.h:783:1: note: candidate template ignored: could not match
      'Iso_cuboid_3' against 'Triangulation_vertex_base_3'
operator==(const Iso_cuboid_3<K>& p, const Iso_cuboid_3<K>& q)
^
/usr/local/include/CGAL/Kernel/global_functions_3.h:795:1: note: candidate template ignored: could not match 'Plane_3'
      against 'Triangulation_vertex_base_3'
operator==(const Plane_3<K>& p, const Plane_3<K>& q)
^
/usr/local/include/CGAL/Kernel/global_functions_3.h:807:1: note: candidate template ignored: could not match 'Segment_3'
      against 'Triangulation_vertex_base_3'
operator==(const Segment_3<K>& p, const Segment_3<K>& q)
^
/usr/local/include/CGAL/Kernel/global_functions_3.h:819:1: note: candidate template ignored: could not match 'Line_3'
      against 'Triangulation_vertex_base_3'
operator==(const Line_3<K>& p, const Line_3<K>& q)
^
/usr/local/include/CGAL/Kernel/global_functions_3.h:831:1: note: candidate template ignored: could not match 'Ray_3'
      against 'Triangulation_vertex_base_3'
operator==(const Ray_3<K>& p, const Ray_3<K>& q)
^
/usr/local/include/CGAL/Kernel/global_functions_3.h:843:1: note: candidate template ignored: could not match 'Triangle_3'
      against 'Triangulation_vertex_base_3'
operator==(const Triangle_3<K>& p, const Triangle_3<K>& q)
^
/usr/local/include/CGAL/Kernel/global_functions_3.h:855:1: note: candidate template ignored: could not match
      'Tetrahedron_3' against 'Triangulation_vertex_base_3'
operator==(const Tetrahedron_3<K>& p, const Tetrahedron_3<K>& q)
^
/usr/local/include/CGAL/Kernel/global_functions_3.h:867:1: note: candidate template ignored: could not match 'Direction_3'
      against 'Triangulation_vertex_base_3'
operator==(const Direction_3<K>& p, const Direction_3<K>& q)
^
/usr/local/include/CGAL/Kernel/global_functions_3.h:879:1: note: candidate template ignored: could not match 'Sphere_3'
      against 'Triangulation_vertex_base_3'
operator==(const Sphere_3<K>& p, const Sphere_3<K>& q)
^
/usr/local/include/CGAL/Kernel/global_functions_3.h:891:1: note: candidate template ignored: could not match 'Vector_3'
      against 'Triangulation_vertex_base_3'
operator==(const Vector_3<K>& p, const Vector_3<K>& q)
^
/usr/local/include/CGAL/Kernel/global_functions_3.h:903:1: note: candidate template ignored: could not match 'Vector_3'
      against 'Triangulation_vertex_base_3'
operator==(const Vector_3<K>& p, const Null_vector& o)
^
/usr/local/include/CGAL/Cartesian/Vector_2.h:107:1: note: candidate template ignored: could not match 'VectorC2' against
      'Triangulation_vertex_base_3'
operator==(const VectorC2<R> &v, const VectorC2<R> &w)
^
/usr/local/include/CGAL/Cartesian/Vector_2.h:123:1: note: candidate template ignored: could not match 'VectorC2' against
      'Triangulation_vertex_base_3'
operator==(const VectorC2<R> &v, const Null_vector &)
^
/usr/local/include/CGAL/Cartesian/Vector_2.h:131:1: note: candidate template ignored: could not match 'VectorC2' against
      'Triangulation_vertex_base_3'
operator==(const Null_vector &n, const VectorC2<R> &v)
^
/usr/local/include/CGAL/Cartesian/Vector_3.h:142:1: note: candidate template ignored: could not match 'VectorC3' against
      'Triangulation_vertex_base_3'
operator==(const VectorC3<R> &v, const VectorC3<R> &w)
^
/usr/local/include/CGAL/Cartesian/Vector_3.h:158:1: note: candidate template ignored: could not match 'VectorC3' against
      'Triangulation_vertex_base_3'
operator==(const VectorC3<R> &v, const Null_vector &) 
^
/usr/local/include/CGAL/Cartesian/Vector_3.h:167:1: note: candidate template ignored: could not match 'VectorC3' against
      'Triangulation_vertex_base_3'
operator==(const Null_vector &n, const VectorC3<R> &v) 
^
/usr/local/include/CGAL/Quotient.h:474:1: note: candidate template ignored: could not match 'Quotient' against
      'Triangulation_vertex_base_3'
operator==(const Quotient<NT>& x, const Quotient<NT>& y)
^
/usr/local/include/CGAL/Quotient.h:480:1: note: candidate template ignored: could not match 'Quotient' against
      'Triangulation_vertex_base_3'
operator==(const Quotient<NT>& x, const NT& y)
^
/usr/local/include/CGAL/Quotient.h:486:1: note: candidate template ignored: could not match 'Quotient' against
      'Triangulation_vertex_base_3'
operator==(const Quotient<NT>& x, const CGAL_int(NT) & y)
^
/usr/local/include/CGAL/Quotient.h:492:1: note: candidate template ignored: could not match 'Quotient' against
      'Triangulation_vertex_base_3'
operator==(const Quotient<NT>& x, const CGAL_double(NT) & y)
^
/usr/local/include/CGAL/Sqrt_extension/Sqrt_extension_type.h:737:1: note: candidate template ignored: could not match
      'Sqrt_extension' against 'Triangulation_vertex_base_3'
operator == (const Sqrt_extension<NT,ROOT,Tag_false,FP_TAG>& p1, const Sqrt_extension<NT,ROOT,Tag_false,FP_TAG>& p2)
^
/usr/local/include/CGAL/Sqrt_extension/Sqrt_extension_type.h:740:1: note: candidate template ignored: could not match
      'Sqrt_extension' against 'Triangulation_vertex_base_3'
operator == (const Sqrt_extension<NT,ROOT,Tag_true,FP_TAG>& p1, const Sqrt_extension<NT,ROOT,Tag_true,FP_TAG>& p2)
^
/usr/local/include/CGAL/Sqrt_extension/Sqrt_extension_type.h:749:67: note: candidate template ignored: could not match
      'Sqrt_extension' against 'Triangulation_vertex_base_3'
template <class NT,class ROOT,class ACDE_TAG,class FP_TAG>   bool operator ==
                                                                  ^
/usr/local/include/CGAL/Sqrt_extension/Sqrt_extension_type.h:760:65: note: candidate template ignored: could not match
      'Sqrt_extension' against 'Triangulation_vertex_base_3'
template <class NT,class ROOT,class ACDE_TAG,class FP_TAG> bool operator ==
                                                                ^
/usr/local/include/CGAL/Sqrt_extension/Sqrt_extension_type.h:772:68: note: candidate template ignored: could not match
      'Sqrt_extension' against 'Triangulation_vertex_base_3'
template <class NT,class ROOT,class ACDE_TAG,class FP_TAG>    bool operator ==
                                                                   ^
/usr/local/include/CGAL/Sqrt_extension/Sqrt_extension_type.h:782:65: note: candidate template ignored: could not match
      'Sqrt_extension' against 'Triangulation_vertex_base_3'
template <class NT,class ROOT,class ACDE_TAG,class FP_TAG> bool operator ==
                                                                ^
/usr/local/include/CGAL/Lazy_exact_nt.h:518:1: note: candidate template ignored: could not match 'Lazy_exact_nt' against
      'Triangulation_vertex_base_3'
operator==(const Lazy_exact_nt<ET1>& a, const Lazy_exact_nt<ET2>& b)
^
/usr/local/include/CGAL/Lazy_exact_nt.h:594:1: note: candidate template ignored: could not match 'Lazy_exact_nt' against
      'Triangulation_vertex_base_3'
operator==(const Lazy_exact_nt<ET>& a, int b)
^
/usr/local/include/CGAL/Lazy_exact_nt.h:632:1: note: candidate template ignored: could not match 'Lazy_exact_nt' against
      'Triangulation_vertex_base_3'
operator==(const Lazy_exact_nt<ET>& a, double b)
^
/usr/local/include/CGAL/utility.h:161:13: note: candidate template ignored: could not match 'Triple' against
      'Triangulation_vertex_base_3'
inline bool operator==(const Triple<T1, T2, T3>& x,
            ^
/usr/local/include/CGAL/utility.h:261:1: note: candidate template ignored: could not match 'Quadruple' against
      'Triangulation_vertex_base_3'
operator==(const Quadruple<T1, T2, T3, T4>& x,
^
/usr/local/include/CGAL/iterator.h:641:6: note: candidate template ignored: could not match 'Filter_iterator' against
      'Triangulation_vertex_base_3'
bool operator==(const Filter_iterator<I,P>& it1,
     ^
/usr/local/include/CGAL/Compact_container.h:982:6: note: candidate template ignored: could not match 'Compact_container'
      against 'Triangulation_vertex_base_3'
bool operator==(const Compact_container<T, Allocator, Increment_policy, TimeStamper> &lhs,
     ^
/usr/local/include/CGAL/Compact_container.h:1267:8: note: candidate template ignored: could not match 'CC_iterator'
      against 'Triangulation_vertex_base_3'
  bool operator==(const CC_iterator<DSC, Const1> &rhs,
       ^
/usr/local/include/CGAL/Compact_container.h:1284:8: note: candidate template ignored: could not match 'CC_iterator'
      against 'Triangulation_vertex_base_3'
  bool operator==(const CC_iterator<DSC, Const> &rhs,
       ^
/usr/local/include/CGAL/Triangulation_simplex_3.h:165:1: note: candidate template ignored: could not match
      'Triangulation_simplex_3' against 'Triangulation_vertex_base_3'
operator==(Triangulation_simplex_3<TriangulationDataStructure_3> s0,
^
/usr/local/include/CGAL/internal/Triangulation_ds_circulators_3.h:181:1: note: candidate template ignored: could not match
      'Triangulation_ds_cell_circulator_3' against 'Triangulation_vertex_base_3'
operator==(typename Tds_::Cell_handle ch, Triangulation_ds_cell_circulator_3<Tds_> cc)
^
/usr/local/include/CGAL/Triangulation_3.h:6956:1: note: candidate template ignored: could not match 'Triangulation_3'
      against 'Triangulation_vertex_base_3'
operator==(const Triangulation_3<GT, Tds1, Lds>& t1,
^
/usr/local/include/CGAL/Periodic_3_triangulation_3.h:4331:1: note: candidate template ignored: could not match
      'Periodic_3_triangulation_3' against 'Triangulation_vertex_base_3'
operator==(const Periodic_3_triangulation_3<GT,TDS1>& t1,
^
1 error generated.
make[3]: *** [graph_triangulation.lo] Error 1
make[2]: *** [install-recursive] Error 1
make[1]: *** [install-recursive] Error 1
make: *** [install-recursive] Error 1

Is there any way to solve this error? Thanks.

@neuronphysics suspect your problem is the same as mine, reported here: https://git.skewed.de/count0/graph-tool/issues/509. Solution is to build from git...