Peter McHale petermchale

## add-update-refresh-github-access-token-on-mac.md

      
              1 file
            
          
              57 forks
            
          
              29 comments
            
          
              284 stars
            
          
                jonjack
                / add-update-refresh-github-access-token-on-mac.md
            
            
              Last active
              May 10, 2024 18:47
            
              
                Adding & Updating GitHub Access Token on Mac
              
          
    Using an Access Token for the first time

Follow the instructions on Github to Create an Access Token in Github
Configure Git to use the osxkeychain

By default, git credentials are not cached so you need to tell Git if you want to avoid having to provide them each time Github requires you to authenticate. On Mac, Git comes with an “osxkeychain” mode, which caches credentials in the secure keychain that’s attached to your system account.
You can tell Git you want to store credentials in the osxkeychain by running the following:-

  
## likelihood_ratio_test.py
"""
Copyright 2017 Ronald J. Nowling

Licensed under the Apache License, Version 2.0 (the "License");
you may not use this file except in compliance with the License.
You may obtain a copy of the License at

    http://www.apache.org/licenses/LICENSE-2.0

Unless required by applicable law or agreed to in writing, software

## README.md

      
              3 files
            
          
              2 forks
            
          
              2 comments
            
          
              3 stars
            
          
                ajschumacher
                / README.md
            
            
              Last active
              May 5, 2024 16:11
                — forked from mbostock/.block
            
              
                Interactive D3 view of sklearn decision tree
              
          
    This is Bostock's interactive Reingold-Tilford Tree with data representing the rules of a simple sklearn decision tree. Click on nodes to expand or collapse.
For more, see the complete write-up.

  
## min-char-rnn.py
"""
Minimal character-level Vanilla RNN model. Written by Andrej Karpathy (@karpathy)
BSD License
"""
import numpy as np

# data I/O
data = open('input.txt', 'r').read() # should be simple plain text file
chars = list(set(data))
data_size, vocab_size = len(data), len(chars)

## gist:1885435

      
              1 file
            
          
              867 forks
            
          
              187 comments
            
          
              2991 stars
            
          
                CristinaSolana
                / gist:1885435
            
            
              Created
              February 22, 2012 14:56
            
              
                Keeping a fork up to date
              
          
    1. Clone your fork:

git clone git@github.com:YOUR-USERNAME/YOUR-FORKED-REPO.git

2. Add remote from original repository in your forked repository:

cd into/cloned/fork-repo
git remote add upstream git://github.com/ORIGINAL-DEV-USERNAME/REPO-YOU-FORKED-FROM.git
git fetch upstream


## lift.sh
# usage ./lift.sh input input.version output.version "FLAGS"
#
# e.g: lift.sh Homo_sapiens.GRCh37.61.gtf hg19 hg18 -gff
# will map hg19 features to hg18 coordinates.
if [ -z $3 ]
then
    echo "usage: lift Homo_sapiens.GRCh37.61.gtf hg19 hg18 -gff"
    exit 1
fi
	"""
	Copyright 2017 Ronald J. Nowling

	Licensed under the Apache License, Version 2.0 (the "License");
	you may not use this file except in compliance with the License.
	You may obtain a copy of the License at

	http://www.apache.org/licenses/LICENSE-2.0

	Unless required by applicable law or agreed to in writing, software
	"""
	Minimal character-level Vanilla RNN model. Written by Andrej Karpathy (@karpathy)
	BSD License
	"""
	import numpy as np

	# data I/O
	data = open('input.txt', 'r').read() # should be simple plain text file
	chars = list(set(data))
	data_size, vocab_size = len(data), len(chars)
	# usage ./lift.sh input input.version output.version "FLAGS"
	#
	# e.g: lift.sh Homo_sapiens.GRCh37.61.gtf hg19 hg18 -gff
	# will map hg19 features to hg18 coordinates.
	if [ -z $3 ]
	then
	echo "usage: lift Homo_sapiens.GRCh37.61.gtf hg19 hg18 -gff"
	exit 1
	fi