martyglaubitz

#STOP launchctl unload ~/Library/LaunchAgents/homebrew.mxcl.postgresql.plist

#START launchctl load ~/Library/LaunchAgents/homebrew.mxcl.postgresql.plist

neilfws

# pmid2bibtex.rb
# convert a PubMed PMID to BibTeX citation format
# updated version of http://chrisamiller.com/science/2010/12/13/using-bioruby-to-fetch-citations-from-pubmed/
# works as of 2015-03-18

require 'bio'
Bio::NCBI.default_email = "me@me.com" # required for EUtils

id  = "18265351"
pm  = Bio::PubMed::efetch(id)         # array of MEDLINE-formatted string

kevinelliott

Mac OS X 10.10 Yosemite

Custom recipe to get OS X 10.10 Yosemite running from scratch, setup applications and developer environment. I use this gist to keep track of the important software and steps required to have a functioning system after a semi-annual fresh install. On average, I reinstall each computer from scratch every 6 months, and I do not perform upgrades between distros.

This keeps the system performing at top speeds, clean of trojans, spyware, and ensures that I maintain good organizational practices for my content and backups. I highly recommend this.

You are encouraged to fork this and modify it to your heart's content to match your own needs.

Install Software

kbroman

# convert c("female", "Male") to c(0,1)

# magrittr is way nicer than nested function calls

convert_sexcodes <-
function(codes)
{
    require(magrittr)

    tolower(codes) %>%

asciimike

#!/usr/bin/python

import sys, os, getopt, re, json

def main(argv):
	inputpath = ''
	outputfile = ''
	verbose = False;
	outputDictionary = {}
	try:

gist:9238018

	id	name
1	11	rick
2	32	tom
3	37	joe


	id	letters
1	11	r
2	11	i
3	11	c

durden

Notes for Python Science Apps talk

Presentation

• Live slides
  • Use and arrow keys to step through
• Video of talk from Pycon 2013
  • I had the pleasure of giving this talk at Pycon 2013 in a slightly shorter form.
• Presentation markdown source
  • Links to repository with actual markdown source that is used for HTML5 slides
• Landslide

dergachev

OS X Screencast to animated GIF

This gist shows how to create a GIF screencast using only free OS X tools: QuickTime, ffmpeg, and gifsicle.

Instructions

To capture the video (filesize: 19MB), using the free "QuickTime Player" application:

kbond

Install git:

sudo apt-get install git

Configure Git:

touch ~/.gitignore_global
git config --global core.excludesfile ~/.gitignore_global
git config --global user.name "Your Name"

git config --global user.email "Your Email"

stefanfoulis

OSX Developer System installation

This guide assumes a fresh install of Mac OSX 10.7 Lion.

Brew User