platinhom

This gist contains some scripts for Amber.

• anteligand.sh: Use antechamber to prepare a ligand for Amber
• complex_tleap.sh: Use tleap to prepare a ligand-protein complex input parameter file (Amber14)
• checkPDBID_MDprep.sh: After running many preparation jobs for PDB ligand-protein complexes, you should check whether the preparation is done.
• rename_water.py: rename water to HOH O,H1,H2 for PDB/PQR

Maybe need some other tools installed, such as pdb2pqr and g09 and so on.

karpathy

LLM Wiki

A pattern for building personal knowledge bases using LLMs.

This is an idea file, it is designed to be copy pasted to your own LLM Agent (e.g. OpenAI Codex, Claude Code, OpenCode / Pi, or etc.). Its goal is to communicate the high level idea, but your agent will build out the specifics in collaboration with you.

The core idea

Most people's experience with LLMs and documents looks like RAG: you upload a collection of files, the LLM retrieves relevant chunks at query time, and generates an answer. This works, but the LLM is rediscovering knowledge from scratch on every question. There's no accumulation. Ask a subtle question that requires synthesizing five documents, and the LLM has to find and piece together the relevant fragments every time. Nothing is built up. NotebookLM, ChatGPT file uploads, and most RAG systems work this way.

milnak

Garlic OS Tips (Windows-based)

GarlicOS Cookbook

Follow these instructions for an easy way to get up and going quickly! These are complete instructions, and will be the easiest way to get started on a new RG35XX.

Set up SD Card

Get a high quality SD (e.g. SanDisk Extreme) card, 128GB or larger, 256GB is recommended. Don't skimp here, they're cheap, and don't use the card that comes with the RG35XX as it's crap.

gangefors

Install TrueNAS SCALE on a partition instead of the full disk

The TrueNAS installer doesn't have a way to use anything less than the full device. This is usually a waste of resources when installing to a modern NVMe which is usually several hundred of GB. TrueNAS SCALE will use only a few GB for its system files so installing to a 16GB partition would be helpful.

The easiest way to solve this is to modify the installer script before starting the installation process.

JakubPetriska

chaeplin

=== decoding for LG A/C ====

• 1. remote of LG AC has two type of HDR mark/space, 8000/4000 and 3100/10000
• 2. HDR 8000/4000 is decoded using decodeLG(IRrecvDumpV2) without problem
• 3. for HDR 3100/10000, use AnalysIR's code : http://www.analysir.com/blog/2014/03/19/air-conditioners-problems-recording-long-infrared-remote-control-signals-arduino/
• 4. for bin output based on AnalysIR's code : https://gist.github.com/chaeplin/a3a4b4b6b887c663bfe8
• 5. remove first two byte(11)
• 6. sample rawcode with bin output : https://gist.github.com/chaeplin/134d232e0b8cfb898860

=== *** ===

xjki

1) Connect your iPhone to your Mac
2) In the Files app, select your phone and in [General] tab make a (unencrypted) phone backup to your Mac
3) After backup is completed select [Manage backups], select one you just made and rightclick on it and [Open in Finder]
4) Download iMazing app https://imazing.com/ and launch it
5) Drag phone backup folder from Finder to iMazing (give it full disk access when asked)
6) in the iMazing under [Data]-[File system]-[Apps] find TVTime app
7) Select Documents folder under TVTime app and select DioCache.db (sort by size, it will be the biggest file)
8) Rightclick on it and use [Copy to Mac] and save in your Downloads folder
9) Run the script (save it in Downloads from the file below) in terminal from ~/Downloads folder: 
python tvtime_recover.py

mary-ext

Bluesky's age assurance sucks, here's how to work around it.

Bluesky has implemented age verification measures in response to regional laws that restrict access, prompting users to verify their age through Epic Games' Kids Web Services before they can access adult content.

This sucks, but thankfully there are ways to work around it.

Before diving in: I encourage you to read this entire document, including the